SMTL ID : 7orf.1

Crystal structure of JNK3 in complex with FMU-001-367 (compound 1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x 0G3: N-[4-[[4-[5-(4-fluorophenyl)-3-methyl-2-methylsulfanyl-imidazol-4-yl]pyridin-2-yl]amino]phenyl]-3-(propanoylamino)benzamide(Covalent)

0G3.1: 23 residues within 4Å: Chain A: I.33, V.41, A.54, K.56, I.87, L.89, L.107, V.108, M.109, E.110, L.111, M.112, D.113, A.114, N.115, C.117, Q.118, Q.121, S.156, N.157, V.159, L.169 Ligands: EDO.7 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:I.33, A:I.33, A:A.54, A:K.56, A:K.56, A:I.87 Hydrogen bonds: A:M.112, A:M.112, A:N.115, A:Q.118 Water bridges: A:Q.118, A:Q.118

20 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: H.83, K.84, A.329, E.330, A.333 Ligand excluded by PLIP EDO.3: 3 residues within 4Å: Chain A: V.324, W.325, Y.326 Ligand excluded by PLIP EDO.4: 4 residues within 4Å: Chain A: E.127, R.128, Y.131, W.325 Ligand excluded by PLIP EDO.5: 6 residues within 4Å: Chain A: H.126, E.127, S.130, K.291, Y.321, V.324 Ligand excluded by PLIP EDO.6: 2 residues within 4Å: Chain A: N.323, Y.326 Ligand excluded by PLIP EDO.7: 5 residues within 4Å: Chain A: G.34, S.35, G.36, N.115 Ligands: 0G3.1 Ligand excluded by PLIP EDO.8: 3 residues within 4Å: Chain A: S.300, V.304, K.309 Ligand excluded by PLIP EDO.9: 3 residues within 4Å: Chain A: T.179, G.202, Y.203 Ligand excluded by PLIP EDO.10: 2 residues within 4Å: Chain A: P.328, E.332 Ligand excluded by PLIP EDO.11: 4 residues within 4Å: Chain A: Q.63, N.64, Q.65, I.350 Ligand excluded by PLIP EDO.12: 3 residues within 4Å: Chain A: A.114, K.161, S.162 Ligand excluded by PLIP EDO.13: 7 residues within 4Å: Chain A: N.29, K.31, A.43, A.44, Y.45, N.52, L.111 Ligand excluded by PLIP EDO.14: 6 residues within 4Å: Chain A: V.119, M.122, E.123, L.124, D.125, R.128 Ligand excluded by PLIP EDO.15: 5 residues within 4Å: Chain A: I.120, E.218, H.222, K.223, I.224 Ligand excluded by PLIP EDO.16: 5 residues within 4Å: Chain A: K.154, T.189, R.190, Y.191, Y.192 Ligand excluded by PLIP EDO.17: 6 residues within 4Å: Chain A: P.245, C.246, V.304, I.305, D.306, K.309 Ligand excluded by PLIP EDO.18: 4 residues within 4Å: Chain A: F.272, R.296, D.297, S.300 Ligand excluded by PLIP EDO.19: 4 residues within 4Å: Chain A: N.82, H.83, K.84, S.88 Ligand excluded by PLIP EDO.20: 2 residues within 4Å: Chain A: A.308, R.310 Ligand excluded by PLIP EDO.21: 3 residues within 4Å: Chain A: E.127, V.324, W.325 Ligand excluded by PLIP

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.22: 7 residues within 4Å: Chain A: T.66, K.69, R.70, R.73, G.172, V.188, R.193 3 PLIP interactions: 3 interactions with chain A Water bridges: A:A.174, A:R.193 Salt bridges: A:R.193

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Reynders, M. et al., Controlling the Covalent Reactivity of a Kinase Inhibitor with Light. Angew.Chem.Int.Ed.Engl. (2021)

Release Date

2021-07-21

Peptides

Mitogen-activated protein kinase 10: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 10

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