SMTL ID : 7osv.1

DeNovoTIM6-SB, a de novo designed TIM barrel with a salt-bridge cluster (crystal form 1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.66 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 1 residues within 4Å: Chain A: K.111 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.111

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 4 residues within 4Å: Chain A: T.47, R.70, R.116, R.162 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:R.116 Water bridges: A:R.162 Salt bridges: A:R.70, A:R.162 ACT.3: 2 residues within 4Å: Chain A: D.183, A.184 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Q.9

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 7 residues within 4Å: Chain A: K.8, Q.9, V.10, E.11, Y.23, A.34, K.37 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.9, A:E.11 Water bridges: A:K.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kordes, S. et al., A newly introduced salt bridge cluster improves structural and biophysical properties of de novo TIM barrels. Protein Sci. (2022)

Release Date

2021-12-15

Peptides

DeNovoTIM6-SB: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DeNovoTIM6-SB

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