- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.46 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x PRO: PROLINE(Non-covalent)
- 2 x 0X7: 3-[(2-methylphenyl)methylamino]pyrazine-2-carboxamide(Non-covalent)
0X7.2: 14 residues within 4Å:- Chain A: R.152, F.161, L.162, R.163, T.164, F.167, W.169, Q.237, G.238, T.240, G.274, T.276, R.278
- Ligands: PRO.1
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:W.169, A:T.276
- Hydrogen bonds: A:R.152, A:T.164, A:T.164, A:T.276
- pi-Stacking: A:F.167
0X7.8: 14 residues within 4Å:- Chain B: R.152, F.161, R.163, T.164, F.167, W.169, Q.237, G.238, G.239, T.240, G.274, T.276, R.278
- Ligands: PRO.7
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:W.169, B:T.276
- Hydrogen bonds: B:T.164, B:T.164, B:T.276
- pi-Stacking: B:F.167
- 2 x ZN: ZINC ION(Non-covalent)
ZN.3: 4 residues within 4Å:- Chain A: C.448, C.453, C.495, C.497
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:C.448, A:C.453, A:C.495, A:C.497
ZN.9: 4 residues within 4Å:- Chain B: C.448, C.453, C.495, C.497
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:C.448, B:C.453, B:C.495, B:C.497
- 7 x SR: STRONTIUM ION(Non-functional Binders)
SR.4: 3 residues within 4Å:- Chain A: E.264, K.265, Q.266
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.264, A:K.265, H2O.1
SR.5: 2 residues within 4Å:- Chain A: G.72, E.74
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:G.72, A:E.74, H2O.2
SR.6: 1 residues within 4Å:- Chain A: E.264
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:E.264
SR.10: 3 residues within 4Å:- Chain B: E.264, K.265, Q.266
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:E.264, B:E.264, B:K.265
SR.11: 1 residues within 4Å:- Chain B: E.264
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:E.264
SR.12: 2 residues within 4Å:- Chain B: G.72, E.74
2 PLIP interactions:2 interactions with chain B- Metal complexes: B:G.72, B:E.74
SR.13: 1 residues within 4Å:- Chain B: K.499
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:K.499
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pang, L. et al., Towards Novel 3-Aminopyrazinamide-Based Prolyl-tRNA Synthetase Inhibitors: In Silico Modelling, Thermal Shift Assay and Structural Studies. Int J Mol Sci (2021)
- Release Date
- 2021-07-28
- Peptides
- Bifunctional glutamate/proline--tRNA ligase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.46 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x PRO: PROLINE(Non-covalent)
- 2 x 0X7: 3-[(2-methylphenyl)methylamino]pyrazine-2-carboxamide(Non-covalent)
- 2 x ZN: ZINC ION(Non-covalent)
- 7 x SR: STRONTIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pang, L. et al., Towards Novel 3-Aminopyrazinamide-Based Prolyl-tRNA Synthetase Inhibitors: In Silico Modelling, Thermal Shift Assay and Structural Studies. Int J Mol Sci (2021)
- Release Date
- 2021-07-28
- Peptides
- Bifunctional glutamate/proline--tRNA ligase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B