- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- monomer
- Ligands
- 1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 6 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
- 16 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 4 residues within 4Å:- Chain A: P.274, A.293, E.294
- Ligands: GOL.9
Ligand excluded by PLIPGOL.6: 5 residues within 4Å:- Chain A: R.280, V.282, N.284
- Ligands: GOL.7, GOL.8
Ligand excluded by PLIPGOL.7: 7 residues within 4Å:- Chain A: R.280, K.281, V.282, P.283
- Ligands: GOL.6, GOL.8, GOL.30
Ligand excluded by PLIPGOL.8: 4 residues within 4Å:- Chain A: P.283, N.284
- Ligands: GOL.6, GOL.7
Ligand excluded by PLIPGOL.9: 7 residues within 4Å:- Chain A: P.274, S.275, K.276, E.294
- Ligands: GOL.5, GOL.10, GOL.11
Ligand excluded by PLIPGOL.10: 5 residues within 4Å:- Chain A: E.221, D.273, S.275
- Ligands: GOL.9, GOL.11
Ligand excluded by PLIPGOL.11: 5 residues within 4Å:- Chain A: D.273, P.274, E.294
- Ligands: GOL.9, GOL.10
Ligand excluded by PLIPGOL.12: 4 residues within 4Å:- Chain A: Q.179, P.180, E.181, H.226
Ligand excluded by PLIPGOL.21: 6 residues within 4Å:- Chain A: Q.178, H.222, H.250
- Ligands: PO4.16, EDO.17, PGE.31
Ligand excluded by PLIPGOL.22: 4 residues within 4Å:- Chain A: H.278, K.281
- Ligands: EPE.26, GOL.27
Ligand excluded by PLIPGOL.23: 3 residues within 4Å:- Chain A: R.184
- Ligands: EPE.3, NA.33
Ligand excluded by PLIPGOL.24: 4 residues within 4Å:- Chain A: P.49, F.50, E.96, D.100
Ligand excluded by PLIPGOL.25: 4 residues within 4Å:- Chain A: F.175, R.182, P.183, R.184
Ligand excluded by PLIPGOL.27: 2 residues within 4Å:- Ligands: GOL.22, EPE.26
Ligand excluded by PLIPGOL.28: 2 residues within 4Å:- Ligands: EPE.26, EPE.29
Ligand excluded by PLIPGOL.30: 3 residues within 4Å:- Chain A: K.281
- Ligands: GOL.7, EPE.29
Ligand excluded by PLIP- 2 x FE: FE (III) ION(Non-covalent)
FE.14: 7 residues within 4Å:- Chain A: D.41, D.79, N.118, H.213, H.248
- Ligands: FE.15, PO4.16
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.79, A:H.213, A:H.248, H2O.1
FE.15: 6 residues within 4Å:- Chain A: D.41, D.79, Y.82, H.250
- Ligands: FE.14, PO4.16
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.41, A:D.79, A:Y.82, A:H.250, H2O.1
- 1 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.17: 10 residues within 4Å:- Chain A: A.220, E.221, H.222, H.248, D.249, H.250, N.251, D.273, S.275
- Ligands: GOL.21
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:E.221, A:H.248, A:H.250, A:N.251, A:D.273, A:D.273
EDO.18: 2 residues within 4Å:- Chain A: T.68
- Ligands: EPE.4
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:T.68
EDO.19: 2 residues within 4Å:- Chain A: P.105, R.108
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:R.108
EDO.20: 3 residues within 4Å:- Chain A: K.90, K.133
- Ligands: NAG-NAG.1
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.90, A:K.133
- 1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 2 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Feder, D. et al., Rational Design of Potent Inhibitors of a Metallohydrolase Using a Fragment-Based Approach. Chemmedchem (2021)
- Release Date
- 2022-03-23
- Peptides
- Tartrate-resistant acid phosphatase type 5: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- monomer
- Ligands
- 1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 6 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
- 16 x GOL: GLYCEROL(Non-functional Binders)
- 2 x FE: FE (III) ION(Non-covalent)
- 1 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 2 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Feder, D. et al., Rational Design of Potent Inhibitors of a Metallohydrolase Using a Fragment-Based Approach. Chemmedchem (2021)
- Release Date
- 2022-03-23
- Peptides
- Tartrate-resistant acid phosphatase type 5: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A