SMTL ID : 7ovr.1

Mature HIV-1 matrix structure

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-24-mer

Ligands

24 x MYR: MYRISTIC ACID(Covalent)

MYR.1: 1 residues within 4Å: Chain A: G.1 Ligand excluded by PLIP MYR.3: 1 residues within 4Å: Chain B: G.1 Ligand excluded by PLIP MYR.5: 1 residues within 4Å: Chain C: G.1 Ligand excluded by PLIP MYR.7: 1 residues within 4Å: Chain D: G.1 Ligand excluded by PLIP MYR.9: 1 residues within 4Å: Chain E: G.1 Ligand excluded by PLIP MYR.11: 1 residues within 4Å: Chain F: G.1 Ligand excluded by PLIP MYR.13: 1 residues within 4Å: Chain G: G.1 Ligand excluded by PLIP MYR.15: 1 residues within 4Å: Chain H: G.1 Ligand excluded by PLIP MYR.17: 1 residues within 4Å: Chain I: G.1 Ligand excluded by PLIP MYR.19: 1 residues within 4Å: Chain J: G.1 Ligand excluded by PLIP MYR.21: 1 residues within 4Å: Chain K: G.1 Ligand excluded by PLIP MYR.23: 1 residues within 4Å: Chain L: G.1 Ligand excluded by PLIP MYR.25: 1 residues within 4Å: Chain M: G.1 Ligand excluded by PLIP MYR.27: 1 residues within 4Å: Chain N: G.1 Ligand excluded by PLIP MYR.29: 1 residues within 4Å: Chain O: G.1 Ligand excluded by PLIP MYR.31: 1 residues within 4Å: Chain P: G.1 Ligand excluded by PLIP MYR.33: 1 residues within 4Å: Chain Q: G.1 Ligand excluded by PLIP MYR.35: 1 residues within 4Å: Chain R: G.1 Ligand excluded by PLIP MYR.37: 1 residues within 4Å: Chain S: G.1 Ligand excluded by PLIP MYR.39: 1 residues within 4Å: Chain T: G.1 Ligand excluded by PLIP MYR.41: 1 residues within 4Å: Chain U: G.1 Ligand excluded by PLIP MYR.43: 1 residues within 4Å: Chain V: G.1 Ligand excluded by PLIP MYR.45: 1 residues within 4Å: Chain W: G.1 Ligand excluded by PLIP MYR.47: 1 residues within 4Å: Chain X: G.1 Ligand excluded by PLIP

24 x PIO: [(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate(Non-covalent)

PIO.2: 3 residues within 4Å: Chain A: L.20, S.76 Ligands: PIO.8 No protein-ligand interaction detected (PLIP) PIO.4: 3 residues within 4Å: Chain B: L.20, S.76 Ligands: PIO.24 No protein-ligand interaction detected (PLIP) PIO.6: 3 residues within 4Å: Chain C: L.20, S.76 Ligands: PIO.40 No protein-ligand interaction detected (PLIP) PIO.8: 3 residues within 4Å: Chain D: L.20, S.76 Ligands: PIO.2 No protein-ligand interaction detected (PLIP) PIO.10: 3 residues within 4Å: Chain E: L.20, S.76 Ligands: PIO.20 No protein-ligand interaction detected (PLIP) PIO.12: 3 residues within 4Å: Chain F: L.20, S.76 Ligands: PIO.16 No protein-ligand interaction detected (PLIP) PIO.14: 2 residues within 4Å: Chain G: L.20, S.76 No protein-ligand interaction detected (PLIP) PIO.16: 3 residues within 4Å: Chain H: L.20, S.76 Ligands: PIO.12 No protein-ligand interaction detected (PLIP) PIO.18: 2 residues within 4Å: Chain I: L.20, S.76 No protein-ligand interaction detected (PLIP) PIO.20: 3 residues within 4Å: Chain J: L.20, S.76 Ligands: PIO.10 No protein-ligand interaction detected (PLIP) PIO.22: 3 residues within 4Å: Chain K: L.20, S.76 Ligands: PIO.28 No protein-ligand interaction detected (PLIP) PIO.24: 3 residues within 4Å: Chain L: L.20, S.76 Ligands: PIO.4 No protein-ligand interaction detected (PLIP) PIO.26: 3 residues within 4Å: Chain M: L.20, S.76 Ligands: PIO.34 No protein-ligand interaction detected (PLIP) PIO.28: 3 residues within 4Å: Chain N: L.20, S.76 Ligands: PIO.22 No protein-ligand interaction detected (PLIP) PIO.30: 2 residues within 4Å: Chain O: L.20, S.76 No protein-ligand interaction detected (PLIP) PIO.32: 2 residues within 4Å: Chain P: L.20, S.76 No protein-ligand interaction detected (PLIP) PIO.34: 3 residues within 4Å: Chain Q: L.20, S.76 Ligands: PIO.26 No protein-ligand interaction detected (PLIP) PIO.36: 3 residues within 4Å: Chain R: L.20, S.76 Ligands: PIO.48 No protein-ligand interaction detected (PLIP) PIO.38: 3 residues within 4Å: Chain S: L.20, S.76 Ligands: PIO.44 No protein-ligand interaction detected (PLIP) PIO.40: 3 residues within 4Å: Chain T: L.20, S.76 Ligands: PIO.6 No protein-ligand interaction detected (PLIP) PIO.42: 2 residues within 4Å: Chain U: L.20, S.76 No protein-ligand interaction detected (PLIP) PIO.44: 3 residues within 4Å: Chain V: L.20, S.76 Ligands: PIO.38 No protein-ligand interaction detected (PLIP) PIO.46: 2 residues within 4Å: Chain W: L.20, S.76 No protein-ligand interaction detected (PLIP) PIO.48: 3 residues within 4Å: Chain X: L.20, S.76 Ligands: PIO.36 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qu, K. et al., Maturation of the matrix and viral membrane of HIV-1. Science (2021)

Release Date

2021-08-18

Peptides

HIV-1 matrix: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
H

H
I

I
J

J
O

K
P

L
Q

M
R

N
S

O
U

P
W

Q
Y

R
b

S
c

T
d

U
e

V
f

W
j

X
l

HIV-1 matrix

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