SMTL ID : 7ow2.1 (1 other biounit)

E3 RING ligase binding domain with peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.17 Å

Oligo State

homo-dimer

Ligands

2 x GLY- LEU- SER- MET- LEU- LEU- GLN: E3 ubiquitin-protein ligase RNF187 peptide(Non-covalent)

GLY-LEU-SER-MET-LEU-LEU-GLN.1: 22 residues within 4Å: Chain A: T.42, N.43, T.44, R.45, G.68, W.69, A.70, L.83, F.86, Q.96, N.98, R.110, S.159, V.160, C.161 Chain B: R.14, L.26, T.44, C.161 Ligands: GLY-LEU-SER-MET-LEU-LEU-GLN.2, GLY-LEU-SER-MET-LEU-LEU-GLN.2, GLY-LEU-SER-MET-LEU-LEU-GLN.2 13 PLIP interactions: 11 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:T.42, A:A.70, A:L.83, A:F.86, B:L.26, B:T.44 Hydrogen bonds: A:N.43, A:T.44, A:Q.96, A:S.159, A:S.159, A:C.161 Salt bridges: A:R.45 GLY-LEU-SER-MET-LEU-LEU-GLN.2: 22 residues within 4Å: Chain A: R.14, L.26, T.44, C.161 Chain B: T.42, N.43, T.44, R.45, G.68, W.69, A.70, L.83, F.86, Q.96, N.98, R.110, S.159, V.160, C.161 Ligands: GLY-LEU-SER-MET-LEU-LEU-GLN.1, GLY-LEU-SER-MET-LEU-LEU-GLN.1, GLY-LEU-SER-MET-LEU-LEU-GLN.1 13 PLIP interactions: 11 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:T.42, B:A.70, B:L.83, B:F.86, A:L.26, A:T.44 Hydrogen bonds: B:N.43, B:T.44, B:G.68, B:Q.96, B:S.159, B:C.161 Salt bridges: B:R.45

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 2 residues within 4Å: Chain A: E.109, R.110 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

James, L.C., E3 ligase targeting domain. To Be Published

Release Date

2022-07-13

Peptides

E3 ubiquitin-protein ligase TRIM7: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

E3 ubiquitin-protein ligase TRIM7

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