SMTL ID : 7owl.1 (1 other biounit)

Odinarchaeota Adenylate kinase (OdinAK) in complex with CTP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-trimer

Ligands

3 x CTP: CYTIDINE-5'-TRIPHOSPHATE(Non-covalent)

CTP.1: 16 residues within 4Å: Chain A: P.9, G.10, A.11, G.12, K.13, T.14, T.15, R.124, K.127, D.128, R.134, Q.176, E.179, F.180, H.182, T.183 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:G.10, A:A.11, A:G.12, A:K.13, A:T.14, A:T.14, A:T.15, A:T.15, A:K.127, A:R.134, A:Q.176, A:Q.176, A:T.183, A:T.183 Salt bridges: A:R.134 pi-Stacking: A:F.180 pi-Cation interactions: A:R.124 CTP.2: 14 residues within 4Å: Chain B: V.8, P.9, G.10, A.11, G.12, K.13, T.14, T.15, R.124, K.127, D.128, Q.176, F.180, T.183 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:G.10, B:A.11, B:G.12, B:K.13, B:T.14, B:T.14, B:T.15, B:R.124, B:Q.176, B:F.180 Salt bridges: B:K.13 pi-Stacking: B:F.180 pi-Cation interactions: B:R.124 CTP.3: 12 residues within 4Å: Chain C: P.9, G.10, A.11, G.12, K.13, T.14, T.15, R.124, D.128, R.134, Q.176, F.180 16 PLIP interactions: 16 interactions with chain C Hydrogen bonds: C:G.10, C:A.11, C:G.12, C:K.13, C:T.14, C:T.14, C:T.14, C:T.15, C:R.124, C:Q.176, C:Q.176, C:F.180 Salt bridges: C:K.13, C:R.134 pi-Stacking: C:F.180 pi-Cation interactions: C:R.124

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Verma, A. et al., Insights into the evolution of enzymatic specificity and catalysis: From Asgard archaea to human adenylate kinases. Sci Adv (2022)

Release Date

2022-09-28

Peptides

Adenylate kinase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Adenylate kinase

Related Entries With Identical Sequence