SMTL ID : 7owv.1

Crystal structure of IpgC in complex with a follow-up compound based on J20

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.59 Å

Oligo State

homo-dimer

Ligands

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 5 residues within 4Å: Chain A: Y.36, Y.39, F.51, G.67, A.70 1 PLIP interactions: 1 interactions with chain A pi-Cation interactions: A:Y.39

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: A.111, P.112, L.113, K.114 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain A: K.93 Chain B: Q.79, Q.106, K.114 Ligand excluded by PLIP

1 x 2IY: 3-(4-chlorophenyl)-5-methylsulfanyl-1~{H}-pyrazole-4-carbonitrile(Non-covalent)

2IY.3: 12 residues within 4Å: Chain A: K.93, N.94 Chain B: Y.85, A.86, F.89, V.99, T.102, Q.106, K.114, E.117, C.118, L.121 8 PLIP interactions: 7 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:F.89, B:V.99, B:T.102, A:K.93 Hydrogen bonds: B:Q.106, B:E.117, B:E.117 Halogen bonds: B:Y.85

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.5: 6 residues within 4Å: Chain B: T.97, F.100, D.128, K.130, L.131, K.134 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.134 Water bridges: B:K.134

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gardonyi, M. et al., Crystal structure of IpgC in complex with a follow-up compound based on J20. To be published

Release Date

2022-07-13

Peptides

Chaperone protein IpgC: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Chaperone protein IpgC

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