SMTL ID : 7owx.1

Structure of coiled-coil tetramer from SARS-CoV-2 spike stalk region

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

homo-tetramer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: K.15, N.16, E.19 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.16 EDO.2: 2 residues within 4Å: Chain A: L.24, Q.25 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.25 EDO.4: 3 residues within 4Å: Chain A: N.18, Q.25 Chain D: N.11 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain A Hydrogen bonds: D:N.11, A:Q.25

2 x ZN: ZINC ION(Non-covalent)

ZN.3: 1 residues within 4Å: Chain C: D.8 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:D.8 ZN.5: 3 residues within 4Å: Chain C: K.5 Chain D: E.19, D.23 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:E.19, D:D.23, D:D.23

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zivic, Z. et al., Structural polymorphism of coiled-coils from the stalk domain of SARS-CoV-2 spike protein. Faseb J. (2022)

Release Date

2022-03-16

Peptides

Spike protein S2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Spike protein S2