SMTL ID : 7oxo.1

human LonP1, R-state, incubated in AMPPCP

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-hexamer

Ligands

6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 17 residues within 4Å: Chain A: D.490, H.491, Y.492, G.526, V.527, G.528, K.529, T.530, S.531, Y.661, I.669, Y.673, L.674, Q.677, V.709, R.710, Q.713 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:Y.492, A:Y.492, A:G.526, A:G.526, A:G.528, A:T.530, A:T.530, A:S.531, A:Y.661 Salt bridges: A:K.529, A:R.710 ADP.2: 17 residues within 4Å: Chain B: D.490, H.491, Y.492, M.494, G.526, V.527, G.528, K.529, T.530, S.531, Y.661, I.669, Y.673, L.674, V.709, R.710, Q.713 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:Y.492, B:Y.492, B:G.526, B:G.526, B:G.528, B:T.530, B:T.530, B:S.531, B:Y.661 Salt bridges: B:K.529, B:R.710 ADP.3: 17 residues within 4Å: Chain C: D.490, H.491, Y.492, G.526, V.527, G.528, K.529, T.530, S.531, Y.661, I.669, Y.673, L.674, Q.677, V.709, R.710, Q.713 14 PLIP interactions: 14 interactions with chain C Hydrogen bonds: C:Y.492, C:G.526, C:G.526, C:G.528, C:T.530, C:T.530, C:S.531, C:Y.661, C:Y.661, C:Q.677, C:Q.677, C:Q.677 Salt bridges: C:K.529, C:R.710 ADP.4: 19 residues within 4Å: Chain D: D.490, H.491, Y.492, M.494, G.526, V.527, G.528, K.529, T.530, S.531, R.534, R.546, Y.661, I.669, Y.673, L.674, V.709, R.710, Q.713 14 PLIP interactions: 14 interactions with chain D Hydrogen bonds: D:Y.492, D:G.526, D:G.528, D:K.529, D:K.529, D:T.530, D:T.530, D:S.531, D:S.531, D:R.534, D:Y.661, D:Y.661 Salt bridges: D:K.529, D:R.710 ADP.5: 13 residues within 4Å: Chain E: H.491, Y.492, G.526, V.527, G.528, K.529, T.530, S.531, Y.661, I.669, Y.673, L.674, R.710 14 PLIP interactions: 14 interactions with chain E Hydrogen bonds: E:Y.492, E:G.526, E:G.526, E:G.528, E:K.529, E:T.530, E:T.530, E:T.530, E:S.531, E:S.531, E:Y.661, E:Y.661 Salt bridges: E:K.529, E:R.710 ADP.6: 18 residues within 4Å: Chain F: D.490, H.491, Y.492, M.494, G.526, V.527, G.528, K.529, T.530, S.531, R.534, Y.661, I.669, Y.673, L.674, V.709, R.710, Q.713 12 PLIP interactions: 12 interactions with chain F Hydrogen bonds: F:Y.492, F:G.526, F:G.528, F:T.530, F:T.530, F:S.531, F:S.531, F:S.531, F:Y.661, F:Y.661 Salt bridges: F:K.529, F:R.710

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mohammed, I. et al., Catalytic cycling of human mitochondrial Lon protease. Structure (2022)

Release Date

2021-12-22

Peptides

Lon protease homolog, mitochondrial: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Lon protease homolog, mitochondrial