SMTL ID : 7oyf.1

Crystal structure of depupylase Dop in complex with Pup and ADP/trifluoromagnesate

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.88 Å
Oligo State
hetero-1-1-mer
Ligands
3 x MG: MAGNESIUM ION(Non-covalent)
1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
1 x ACT: ACETATE ION(Non-functional Binders)
3 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
1 x KQB: trifluoromagnesate monohydrate(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Cui, H. et al., Structures of prokaryotic ubiquitin-like protein Pup in complex with depupylase Dop reveal the mechanism of catalytic phosphate formation. Nat Commun (2021)
Release Date
2021-12-01
Peptides
Depupylase: A
Prokaryotic ubiquitin-like protein Pup: B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B

Depupylase

Prokaryotic ubiquitin-like protein Pup

Related Entries With Identical Sequence

5lrt.1 | 7oxv.1 | 7oxy.1 | 7oy3.1 | 7oyh.1