SMTL ID : 7oyi.1 (1 other biounit)

Escherichia coli YtfE_E159L(MN)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

monomer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 9 residues within 4Å: Chain A: I.78, H.83, M.129, E.132, F.137, H.203, E.207 Ligands: MN.2, O.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:H.83, A:E.132, A:H.203, A:E.207, O.3 MN.2: 7 residues within 4Å: Chain A: H.128, E.132, H.159, E.207, F.212 Ligands: MN.1, O.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:H.128, A:E.132, A:H.159, A:E.207, O.3

1 x O: OXYGEN ATOM(Non-covalent)

O.3: 9 residues within 4Å: Chain A: H.83, L.125, H.128, M.129, E.132, H.203, E.207 Ligands: MN.1, MN.2 No protein-ligand interaction detected (PLIP)

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 9 residues within 4Å: Chain A: R.22, D.25, K.170, N.175, V.176, N.194, I.197, D.198, M.201 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.22, A:K.170, A:N.194 Water bridges: A:N.194

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 1 residues within 4Å: Chain A: E.88 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.88

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 6 residues within 4Å: Chain A: M.26, D.27, Q.34, A.39, R.42, K.43 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Silva, L.S.O. et al., Repair of Iron Center Proteins-A Different Class of Hemerythrin-like Proteins. Molecules (2022)

Release Date

2022-07-06

Peptides

Iron-sulfur cluster repair protein YtfE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Iron-sulfur cluster repair protein YtfE

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