SMTL ID : 7oz8.1

Sulfated host glycan recognition by carbohydrate sulfatases of the human gut microbiota (BT1918_S1_46)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x NGS: 2-acetamido-2-deoxy-6-O-sulfo-beta-D-glucopyranose(Non-covalent)

NGS.1: 12 residues within 4Å: Chain A: Y.96, G.144, R.145, W.175, N.176, H.223, R.329, K.330, T.331, C.409, Y.410 Ligands: ACT.2 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.96, A:T.331 Hydrogen bonds: A:Y.96, A:R.145, A:N.176, A:H.223, A:R.329, A:K.330, A:Y.410 Water bridges: A:K.123, A:W.175, A:H.318 Salt bridges: A:R.329

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 8 residues within 4Å: Chain A: D.35, K.123, S.143, R.145, W.175, A.220, H.223 Ligands: NGS.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:W.175, A:A.220, A:H.223 Hydrogen bonds: A:S.143, A:A.220 Water bridges: A:S.75, A:R.145, A:R.145 Salt bridges: A:K.123, A:R.145, A:H.223

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Luis, A.S. et al., Sulfated glycan recognition by carbohydrate sulfatases of the human gut microbiota. Nat.Chem.Biol. (2022)

Release Date

2022-06-29

Peptides

Choline-sulfatase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Choline-sulfatase