SMTL ID : 7ozy.2 (1 other biounit)

FGFR2 kinase domain (residues 461-763) in complex with 38.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.28 Å

Oligo State

monomer

Ligands

1 x 47I: 4-[3-(4-piperazin-4-ium-1-ylphenyl)-1H-indazol-6-yl]phenol(Non-covalent)

47I.1: 16 residues within 4Å: Chain A: K.25, L.27, V.35, A.55, K.57, E.74, I.88, V.104, E.105, Y.106, A.107, S.108, G.110, N.111, L.173, D.184 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.27, A:L.27, A:V.35, A:A.55, A:K.57, A:V.104, A:Y.106, A:L.173, A:L.173 Hydrogen bonds: A:K.57, A:E.105, A:A.107

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 8 residues within 4Å: Chain A: R.165, L.187, R.189, T.200, T.201, N.202, G.203, R.204 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.189, A:N.202, A:G.203, A:R.204 Salt bridges: A:R.165, A:R.204

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 8 residues within 4Å: Chain A: S.73, E.76, M.77, M.80, A.188, R.189, D.190, N.193 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.190, A:N.193

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Turner, L.D. et al., From Fragment to Lead: De Novo Design and Development toward a Selective FGFR2 Inhibitor. J.Med.Chem. (2022)

Release Date

2021-12-01

Peptides

Fibroblast growth factor receptor 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
BBB

Fibroblast growth factor receptor 2

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