SMTL ID : 7p06.1

Cryo-EM structure of Pdr5 from Saccharomyces cerevisiae in outward-facing conformation with ADP-orthovanadate/ATP

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 22 residues within 4Å: Chain A: G.138, A.139, F.173, I.175, P.195, G.196, S.197, G.198, C.199, T.200, T.201, G.212, F.213, E.244, Y.367, K.802, G.803, E.804, I.805, L.806, N.1011, V.1012 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:A.139, A:G.196, A:S.197, A:G.198, A:C.199, A:T.200, A:T.200, A:T.201, A:T.201, A:E.244, A:E.244, A:Y.367, A:K.802, A:E.804, A:E.804, A:N.1011

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: S.310, G.311, T.912, Q.951 Ligands: AOV.3 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:T.912

1 x AOV: ADP ORTHOVANADATE

AOV.3: 28 residues within 4Å: Chain A: H.295, T.296, T.299, R.307, V.309, S.310, G.311, G.312, E.313, G.338, Y.876, V.878, I.880, R.885, I.887, A.906, S.907, G.908, A.909, G.910, K.911, T.912, T.913, M.924, Q.951, E.1036, H.1068 Ligands: MG.2 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:T.299, A:R.307, A:R.307, A:G.311, A:G.312, A:G.338, A:G.908, A:G.908, A:K.911, A:K.911, A:T.912, A:T.913, A:T.913, A:Q.951, A:E.1036, A:H.1068 Salt bridges: A:R.307, A:K.911

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Harris, A. et al., Structure and efflux mechanism of the yeast pleiotropic drug resistance transporter Pdr5. Nat Commun (2021)

Release Date

2021-11-10

Peptides

Pleiotropic ABC efflux transporter of multiple drugs: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Pleiotropic ABC efflux transporter of multiple drugs

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