SMTL ID : 7p0b.1

Human mitochondrial Lon protease without substrate

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 4.11 Å

Oligo State

homo-hexamer

Ligands

6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 17 residues within 4Å: Chain A: H.427, Y.428, M.430, P.460, P.461, G.462, V.463, G.464, K.465, T.466, S.467, Y.597, I.605, Y.609, Q.613, V.645, R.646 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:Y.428, A:G.462, A:V.463, A:G.464, A:K.465, A:T.466, A:T.466, A:S.467, A:S.467, A:Y.597, A:Q.613 Salt bridges: A:K.465, A:R.646 pi-Stacking: A:H.427 ADP.2: 15 residues within 4Å: Chain B: H.427, Y.428, P.461, G.462, V.463, G.464, K.465, T.466, S.467, Y.597, I.605, Y.609, Q.613, V.645, Q.649 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:Y.428, B:G.462, B:V.463, B:G.464, B:K.465, B:T.466, B:T.466, B:S.467, B:S.467, B:Y.597, B:Y.597, B:Q.613, B:Q.649 Salt bridges: B:K.465 pi-Stacking: B:H.427 ADP.3: 15 residues within 4Å: Chain C: H.427, Y.428, P.461, G.462, V.463, G.464, K.465, T.466, S.467, Y.597, I.605, Y.609, L.610, V.645, Q.649 12 PLIP interactions: 12 interactions with chain C Hydrogen bonds: C:Y.428, C:Y.428, C:G.462, C:V.463, C:G.464, C:K.465, C:T.466, C:T.466, C:S.467, C:Y.597 Salt bridges: C:K.465 pi-Stacking: C:H.427 ADP.4: 15 residues within 4Å: Chain D: H.427, Y.428, P.461, G.462, V.463, G.464, K.465, T.466, S.467, Y.597, I.605, Y.609, Q.613, V.645, Q.649 17 PLIP interactions: 17 interactions with chain D Hydrogen bonds: D:Y.428, D:G.462, D:V.463, D:G.464, D:K.465, D:T.466, D:T.466, D:T.466, D:S.467, D:S.467, D:S.467, D:Y.597, D:Y.597, D:Q.613, D:Q.649, D:Q.649 Salt bridges: D:K.465 ADP.5: 14 residues within 4Å: Chain E: H.427, Y.428, P.460, P.461, G.462, V.463, G.464, K.465, T.466, S.467, Y.597, Y.609, V.645, R.646 13 PLIP interactions: 13 interactions with chain E Hydrogen bonds: E:Y.428, E:G.462, E:V.463, E:G.464, E:K.465, E:T.466, E:T.466, E:S.467, E:Y.597, E:R.646, E:R.646 Salt bridges: E:K.465, E:R.646 ADP.6: 17 residues within 4Å: Chain F: H.427, Y.428, M.430, P.461, G.462, V.463, G.464, K.465, T.466, S.467, Y.597, I.605, Y.609, Q.613, V.645, R.646, Q.649 16 PLIP interactions: 16 interactions with chain F Hydrogen bonds: F:Y.428, F:G.462, F:V.463, F:G.464, F:K.465, F:T.466, F:T.466, F:S.467, F:Y.597, F:Y.597, F:Q.613, F:Q.613, F:Q.649 Salt bridges: F:R.646, F:R.646 pi-Stacking: F:H.427

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Valentin Gese, G. et al., A dual allosteric pathway drives human mitochondrial Lon. To Be Published

Release Date

2021-08-11

Peptides

Lon protease homolog, mitochondrial: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Lon protease homolog, mitochondrial