SMTL ID : 7p0j.1

Crystal structure of S.pombe Mdb1 BRCT domains

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.48 Å

Oligo State

monomer

Ligands

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 8 residues within 4Å: Chain A: S.10, S.11, R.48, T.50, H.51, K.52 Ligands: NA.2, MG.4 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:S.10, A:S.11, A:T.50 Water bridges: A:T.9, A:R.48, A:K.52, A:K.52, A:K.52 Salt bridges: A:R.48, A:K.52, A:K.52

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 3 residues within 4Å: Chain A: S.11, R.48 Ligands: CIT.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.11 NA.3: 1 residues within 4Å: Chain A: S.170 4 PLIP interactions: 4 interactions with chain A Water bridges: A:S.170, A:S.170, A:S.170, A:D.199

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.4: 2 residues within 4Å: Chain A: K.52 Ligands: CIT.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Day, M. et al., Phosphorylation-dependent assembly of DNA damage response systems and the central roles of TOPBP1. DNA Repair (Amst) (2021)

Release Date

2022-07-13

Peptides

DNA damage response protein Mdb1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA damage response protein Mdb1

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