SMTL ID : 7p0u.1 (1 other biounit)

ORF virus encoded Bcl-2 homolog ORFV125 in complex with Puma BH3 peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

hetero-2-2-mer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 10 residues within 4Å: Chain A: A.23, Y.26, F.116 Chain C: A.23, Y.26, L.113, F.116, M.117, V.120 Ligands: EDO.5 No protein-ligand interaction detected (PLIP) EDO.2: 3 residues within 4Å: Chain A: V.142, A.143, H.146 No protein-ligand interaction detected (PLIP) EDO.5: 8 residues within 4Å: Chain A: L.113, V.114, M.117 Chain C: M.117, V.120, Y.121, L.124 Ligands: EDO.1 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:M.117

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: D.13, S.15, R.109, G.110 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.13, A:S.15 Water bridges: A:S.15 GOL.4: 6 residues within 4Å: Chain A: E.32, Q.33, L.34, T.35, P.36, R.39 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.34

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Suraweera, C.D. et al., Structural Investigation of Orf Virus Bcl-2 Homolog ORFV125 Interactions with BH3-Motifs from BH3-Only Proteins Puma and Hrk. Viruses (2021)

Release Date

2022-07-13

Peptides

Apoptosis inhibitor: AC
Activator of apoptosis harakiri: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
D

B
U

D
E

Apoptosis inhibitor

Activator of apoptosis harakiri

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