SMTL ID : 7p11.2 (1 other biounit)

Galectin-8 N-terminal carbohydrate recognition domain in complex with quinoline D-galactal ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x 5KM: 2-[[(2~{R},3~{R},4~{R})-2-(hydroxymethyl)-3-oxidanyl-3,4-dihydro-2~{H}-pyran-4-yl]oxymethyl]quinoline-7-carboxylic acid(Non-covalent)

5KM.1: 12 residues within 4Å: Chain A: R.40, Q.42, R.54, H.60, N.62, R.64, V.72, N.74, W.81, E.84, Y.136, G.137 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.136 Hydrogen bonds: A:R.40, A:R.40, A:H.60, A:R.64, A:N.74, A:E.84 Water bridges: A:R.40, A:Q.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hassan, M. et al., Structure-Guided Design of d-Galactal Derivatives with High Affinity and Selectivity for the Galectin-8 N-Terminal Domain. Acs Med.Chem.Lett. (2021)

Release Date

2021-12-15

Peptides

Galectin-8: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Galectin-8

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