SMTL ID : 7p26.1

Sulfated host glycan recognition by carbohydrate sulfatases of the human gut microbiota (BT4631_S1_15)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

monomer

Ligands

1 x 15P: POLYETHYLENE GLYCOL (N=34)(Non-functional Binders)

15P.1: 7 residues within 4Å: Chain A: A.104, G.106, R.174, I.235, Y.364, N.441, W.466 No protein-ligand interaction detected (PLIP)

1 x P4K: polyethylene glycol(Non-covalent)

P4K.2: 6 residues within 4Å: Chain A: P.434, K.449, G.450, W.452, I.500, E.503 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.449 Water bridges: A:G.450

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 5 residues within 4Å: Chain A: D.42, D.43, S.82, D.333, N.334 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.42, A:D.43, A:S.82, A:D.333, A:D.333

2 x NA: SODIUM ION(Non-functional Binders)

NA.4: 3 residues within 4Å: Chain A: P.114, D.159, I.160 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.114 NA.5: 3 residues within 4Å: Chain A: K.99, G.100, T.101 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Luis, A.S. et al., Sulfated glycan recognition by carbohydrate sulfatases of the human gut microbiota. Nat.Chem.Biol. (2022)

Release Date

2022-06-29

Peptides

Putative arylsulfatase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Putative arylsulfatase