SMTL ID : 7p2e.1

Human mitochondrial ribosome small subunit in complex with IF3, GMPPMP and streptomycin

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
1 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
1 x SPM: SPERMINE(Non-functional Binders)
1 x 5I0: [(2~{S},3~{S},4~{S},5~{R},6~{S})-2-[(2~{R},3~{R},4~{R},5~{S})-2-[(1~{R},2~{S},3~{R},4~{R},5~{S},6~{R})-2,4-bis[[azaniumylidene(azanyl)methyl]amino]-3,5,6-tris(oxidanyl)cyclohexyl]oxy-4-[bis(oxidanyl)methyl]-5-methyl-4-oxidanyl-oxolan-3-yl]oxy-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-3-yl]-methyl-azanium(Non-covalent)
21 x K: POTASSIUM ION(Non-functional Binders)(Non-covalent)
62 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
1 x ZN: ZINC ION(Non-covalent)
2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Itoh, Y. et al., Structure of the mitoribosomal small subunit with streptomycin reveals Fe-S clusters and physiological molecules. Elife (2022)
Release Date
2022-07-27
Peptides
28S ribosomal protein S2, mitochondrial: B
28S ribosomal protein S24, mitochondrial: C
28S ribosomal protein S5, mitochondrial: D
28S ribosomal protein S6, mitochondrial: E
28S ribosomal protein S7, mitochondrial: F
28S ribosomal protein S9, mitochondrial: G
28S ribosomal protein S10, mitochondrial: H
28S ribosomal protein S11, mitochondrial: I
28S ribosomal protein S12, mitochondrial: J
28S ribosomal protein S14, mitochondrial: K
28S ribosomal protein S15, mitochondrial: L
28S ribosomal protein S16, mitochondrial: M
28S ribosomal protein S17, mitochondrial: N
28S ribosomal protein S18b, mitochondrial: O
28S ribosomal protein S18c, mitochondrial: P
28S ribosomal protein S21, mitochondrial: Q
28S ribosomal protein S22, mitochondrial: R
28S ribosomal protein S23, mitochondrial: S
28S ribosomal protein S25, mitochondrial: T
28S ribosomal protein S26, mitochondrial: U
28S ribosomal protein S27, mitochondrial: V
28S ribosomal protein S28, mitochondrial: W
28S ribosomal protein S29, mitochondrial: X
28S ribosomal protein S31, mitochondrial: Y
28S ribosomal protein S33, mitochondrial: Z
28S ribosomal protein S34, mitochondrial: 0
28S ribosomal protein S35, mitochondrial: 1
Coiled-coil-helix-coiled-coil-helix domain-containing protein 1: 2
Aurora kinase A-interacting protein: 3
Pentatricopeptide repeat domain-containing protein 3, mitochondrial: 4
Translation initiation factor IF-3, mitochondrial: 5
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
B
B
C
C
D
D
E
E
F
F
G
G
H
H
I
I
J
J
K
K
L
L
M
M
N
N
O
O
P
P
Q
Q
R
R
S
S
T
T
U
U
V
V
W
W
X
X
Y
Y
Z
Z
0
0
1
1
2
2
3
3
4
4
5
8

28S ribosomal protein S2, mitochondrial

28S ribosomal protein S24, mitochondrial

28S ribosomal protein S5, mitochondrial

28S ribosomal protein S6, mitochondrial

28S ribosomal protein S7, mitochondrial

28S ribosomal protein S9, mitochondrial

28S ribosomal protein S10, mitochondrial

28S ribosomal protein S11, mitochondrial

28S ribosomal protein S12, mitochondrial

28S ribosomal protein S14, mitochondrial

28S ribosomal protein S15, mitochondrial

28S ribosomal protein S16, mitochondrial

28S ribosomal protein S17, mitochondrial

28S ribosomal protein S18b, mitochondrial

28S ribosomal protein S18c, mitochondrial

28S ribosomal protein S21, mitochondrial

28S ribosomal protein S22, mitochondrial

28S ribosomal protein S23, mitochondrial

28S ribosomal protein S25, mitochondrial

28S ribosomal protein S26, mitochondrial

28S ribosomal protein S27, mitochondrial

28S ribosomal protein S28, mitochondrial

28S ribosomal protein S29, mitochondrial

28S ribosomal protein S31, mitochondrial

28S ribosomal protein S33, mitochondrial

28S ribosomal protein S34, mitochondrial

28S ribosomal protein S35, mitochondrial

Coiled-coil-helix-coiled-coil-helix domain-containing protein 1

Aurora kinase A-interacting protein

Pentatricopeptide repeat domain-containing protein 3, mitochondrial

Translation initiation factor IF-3, mitochondrial

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6rw4.1 | 6rw5.1 | 6vlz.1 | 6vlz.2 | 6vlz.3 | 6vlz.5 | 6vlz.6 | 6vlz.7 | 6vlz.8 | 6vlz.9 | 6vlz.10 | 6vlz.12 | 6vlz.13 | 6vlz.14 | 6vlz.16 | 6vlz.17 | 6vlz.18 | 6vlz.19 | 6vlz.20 | 6vlz.21 | 6vlz.22 | 6vlz.23 | 6vlz.24 | 6vlz.25 | 6vlz.26 | 6vlz.27 | 6vlz.28 | 6vlz.29 | 6vlz.30 | 6zm5.57  more...