SMTL ID : 7p36.1

X-ray structure of Lactobacillus kefir alcohol dehydrogenase (wild type)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.14 Å

Oligo State

homo-tetramer

Ligands

8 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.1: 3 residues within 4Å: Chain A: Q.260 Chain D: Q.260 Ligands: MG.22 No protein-ligand interaction detected (PLIP) MG.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.8: 3 residues within 4Å: Chain B: Q.260 Chain C: Q.260 Ligands: MG.15 No protein-ligand interaction detected (PLIP) MG.9: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.15: 3 residues within 4Å: Chain B: Q.260 Chain C: Q.260 Ligands: MG.8 No protein-ligand interaction detected (PLIP) MG.16: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.22: 3 residues within 4Å: Chain A: Q.260 Chain D: Q.260 Ligands: MG.1 No protein-ligand interaction detected (PLIP) MG.23: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: T.201, P.202, L.203 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain B: T.201, P.202, L.203 Ligand excluded by PLIP CL.17: 3 residues within 4Å: Chain C: T.201, P.202, L.203 Ligand excluded by PLIP CL.24: 3 residues within 4Å: Chain D: T.201, P.202, L.203 Ligand excluded by PLIP

16 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 5 residues within 4Å: Chain A: T.218, K.219, Y.257 Chain D: Q.260 Ligands: EDO.25 Ligand excluded by PLIP EDO.5: 3 residues within 4Å: Chain A: E.208, G.209, E.212 Ligand excluded by PLIP EDO.6: 6 residues within 4Å: Chain A: G.143, A.144, D.188, V.189, R.190, K.244 Ligand excluded by PLIP EDO.7: 4 residues within 4Å: Chain A: E.211, S.215, H.224, I.225 Ligand excluded by PLIP EDO.11: 5 residues within 4Å: Chain B: T.218, K.219, Y.257 Chain C: Q.260 Ligands: EDO.18 Ligand excluded by PLIP EDO.12: 3 residues within 4Å: Chain B: E.208, G.209, E.212 Ligand excluded by PLIP EDO.13: 6 residues within 4Å: Chain B: G.143, A.144, D.188, V.189, R.190, K.244 Ligand excluded by PLIP EDO.14: 4 residues within 4Å: Chain B: E.211, S.215, H.224, I.225 Ligand excluded by PLIP EDO.18: 5 residues within 4Å: Chain B: Q.260 Chain C: T.218, K.219, Y.257 Ligands: EDO.11 Ligand excluded by PLIP EDO.19: 3 residues within 4Å: Chain C: E.208, G.209, E.212 Ligand excluded by PLIP EDO.20: 6 residues within 4Å: Chain C: G.143, A.144, D.188, V.189, R.190, K.244 Ligand excluded by PLIP EDO.21: 4 residues within 4Å: Chain C: E.211, S.215, H.224, I.225 Ligand excluded by PLIP EDO.25: 5 residues within 4Å: Chain A: Q.260 Chain D: T.218, K.219, Y.257 Ligands: EDO.4 Ligand excluded by PLIP EDO.26: 3 residues within 4Å: Chain D: E.208, G.209, E.212 Ligand excluded by PLIP EDO.27: 6 residues within 4Å: Chain D: G.143, A.144, D.188, V.189, R.190, K.244 Ligand excluded by PLIP EDO.28: 4 residues within 4Å: Chain D: E.211, S.215, H.224, I.225 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Walla, B. et al., Transfer of a Rational Crystal Contact Engineering Strategy between Diverse Alcohol Dehydrogenases. Crystals (2021)

Release Date

2021-07-21

Peptides

NADPH dependent R-specific alcohol dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

NADPH dependent R-specific alcohol dehydrogenase