SMTL ID : 7p3a.2 (1 other biounit)

N-terminal domain of CGI-99

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

3 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.1: 6 residues within 4Å: Chain A: I.39, R.40, H.41, V.69, L.88, L.92 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.39, A:L.92 IPA.2: 6 residues within 4Å: Chain A: C.21, E.24, T.25, R.28, I.53, H.54 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:E.24 Hydrogen bonds: A:R.28, A:H.54 IPA.3: 6 residues within 4Å: Chain A: F.19, N.20, C.21, D.23, E.24, R.78 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.19, A:E.24

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.4: 3 residues within 4Å: Chain A: Q.76, D.77, E.80 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.77, A:E.80

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 6 residues within 4Å: Chain A: F.27, W.58, P.59, F.62, I.75, R.78 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kroupova, A. et al., Molecular architecture of the human tRNA ligase complex. Elife (2021)

Release Date

2021-12-22

Peptides

RNA transcription, translation and transport factor protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

RNA transcription, translation and transport factor protein

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