SMTL ID : 7p3v.1

B-Raf V600E structure bound to a new inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.37 Å

Oligo State

homo-dimer

Ligands

2 x 5I4: ~{N}-[3-[5-(2-azanylpyrimidin-4-yl)-2-[(3~{S})-morpholin-3-yl]-1,3-thiazol-4-yl]-2-fluoranyl-phenyl]-2,5-bis(fluoranyl)benzenesulfonamide(Non-covalent)

5I4.1: 21 residues within 4Å: Chain A: I.17, G.18, S.19, V.25, A.35, K.37, L.59, I.67, L.68, L.69, F.70, I.81, T.83, Q.84, W.85, C.86, F.137, I.146, G.147, D.148, F.149 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:V.25, A:A.35, A:K.37, A:L.59, A:L.68, A:L.68, A:F.70, A:I.81, A:T.83 Hydrogen bonds: A:C.86, A:C.86, A:D.148, A:F.149 Water bridges: A:S.19 pi-Stacking: A:F.137 pi-Cation interactions: A:W.85, A:F.137 5I4.2: 21 residues within 4Å: Chain B: I.17, G.18, S.19, V.25, A.35, K.37, L.59, I.67, L.68, L.69, F.70, I.81, T.83, Q.84, W.85, C.86, F.137, I.146, G.147, D.148, F.149 20 PLIP interactions: 20 interactions with chain B Hydrophobic interactions: B:V.25, B:A.35, B:K.37, B:K.37, B:L.59, B:L.68, B:L.68, B:F.70, B:I.81, B:T.83, B:F.137, B:F.149 Hydrogen bonds: B:K.37, B:C.86, B:C.86, B:D.148, B:D.148, B:F.149 pi-Cation interactions: B:W.85, B:F.137

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schneider, M. et al., Structure-Based and Knowledge-Informed Design of B-Raf Inhibitors Devoid of Deleterious PXR Binding. J.Med.Chem. (2022)

Release Date

2021-11-03

Peptides

Serine/threonine-protein kinase B-raf: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Serine/threonine-protein kinase B-raf