SMTL ID : 7p42.1

Crystal structure of IpgC in complex with a follow-up compound based on J2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.1: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.5: 1 residues within 4Å: Chain B: S.33 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:S.33, H2O.6, H2O.6, H2O.6

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: A.111, P.112, L.113, K.114 Ligand excluded by PLIP CL.6: 4 residues within 4Å: Chain A: K.93 Chain B: Q.79, Q.106, K.114 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain B: A.111, P.112, L.113, K.114 Ligand excluded by PLIP

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 5 residues within 4Å: Chain A: K.93, Y.96 Chain B: A.86, T.102, C.118 No protein-ligand interaction detected (PLIP)

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 4 residues within 4Å: Chain A: H.101, K.130, L.131, K.134 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.134 PEG.9: 4 residues within 4Å: Chain B: D.128, K.130, L.131, K.134 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.134

1 x 5I8: 2-(4,6-dimethylpyrimidin-2-yl)-3H-isoindol-1-imine(Non-covalent)

5I8.8: 6 residues within 4Å: Chain B: Y.36, Y.39, F.51, M.66, G.67, A.70 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:Y.36, B:Y.39, B:F.51, B:M.66, B:A.70 Water bridges: B:H.101 pi-Stacking: B:Y.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gardonyi, M. et al., Crystal structure of IpgC in complex with a follow-up compound based on J2. To be published

Release Date

2022-07-20

Peptides

Chaperone protein IpgC: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Chaperone protein IpgC

Related Entries With Identical Sequence