SMTL ID : 7p45.1

Structure of CgGBE in P212121 space group

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

monomer

Ligands

10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: D.232, G.279, L.281 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.232, A:D.232, A:L.281 EDO.2: 6 residues within 4Å: Chain A: Y.61, Y.64, L.66, H.67, W.150, Y.345 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.66 Water bridges: A:L.66 EDO.3: 3 residues within 4Å: Chain A: F.182, H.184, Q.185 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.185 EDO.4: 5 residues within 4Å: Chain A: F.248, Y.250, W.323, H.487, D.488 No protein-ligand interaction detected (PLIP) EDO.5: 6 residues within 4Å: Chain A: H.311, G.318, E.319, S.325, R.326, L.327 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.311, A:S.325, A:R.326, A:L.327 Water bridges: A:S.325 EDO.6: 5 residues within 4Å: Chain A: R.31, L.33, A.34, H.393, A.397 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.31, A:L.33, A:A.34, A:H.393 EDO.7: 3 residues within 4Å: Chain A: A.443, M.444, A.445 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.443, A:A.445 EDO.8: 7 residues within 4Å: Chain A: R.475, H.476, G.477, E.478, K.479, E.540, Q.608 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.474, A:H.476, A:G.477, A:E.478 Water bridges: A:E.540, A:E.540, A:Q.608 EDO.9: 5 residues within 4Å: Chain A: E.200, Y.483, S.486, H.487, L.543 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.487, A:H.487 EDO.10: 3 residues within 4Å: Chain A: F.640, T.641, D.642 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.641

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Conchou, L. et al., The Candida glabrata glycogen branching enzyme structure reveals unique features of branching enzymes of the Saccharomycetaceae phylum. Glycobiology (2022)

Release Date

2022-07-27

Peptides

1,4-alpha-glucan-branching enzyme: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

1,4-alpha-glucan-branching enzyme

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