SMTL ID : 7p47.1

Structure of the E3 ligase Smc5/Nse2 in complex with Ubc9-SUMO thioester mimetic

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.31 Å

Oligo State

hetero-1-1-1-2-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain C: C.147, H.149, C.168, C.173 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.147, C:H.149, C:C.168, C:C.173

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Varejao, N. et al., Structural basis for the E3 ligase activity enhancement of yeast Nse2 by SUMO-interacting motifs. Nat Commun (2021)

Release Date

2021-11-24

Peptides

Structural maintenance of chromosomes protein 5: A
SUMO-conjugating enzyme UBC9: B
E3 SUMO-protein ligase MMS21: C
Ubiquitin-like protein SMT3: DE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

C
A

D
E

E
D

Structural maintenance of chromosomes protein 5

SUMO-conjugating enzyme UBC9

E3 SUMO-protein ligase MMS21

Ubiquitin-like protein SMT3