SMTL ID : 7p4e.1

Crystal structure of PPARgamma in complex with compound FL217

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x 5IV: ~{N}-[[4-(cyclopropylsulfonylamino)-2-(trifluoromethyl)phenyl]methyl]-1-[(3-fluorophenyl)methyl]indole-5-carboxamide(Non-covalent)

5IV.1: 16 residues within 4Å: Chain A: I.49, G.58, G.84, C.85, R.88, S.89, H.123, Y.127, L.130, V.139, I.141, S.142, F.163, M.164, K.167, H.249 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.49, A:R.88, A:Y.127, A:I.141, A:I.141, A:I.141 Hydrogen bonds: A:S.89, A:S.142, A:K.167

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: M.2, K.222 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.222

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: L.4, S.8, R.12 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.8 EDO.4: 6 residues within 4Å: Chain A: F.26, L.28, R.88, E.95, M.129, L.133 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.28, A:R.88, A:M.129 Water bridges: A:S.132 EDO.5: 5 residues within 4Å: Chain A: K.30, R.34, N.175, E.178 Ligands: EDO.7 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.30, A:E.178 Water bridges: A:L.179 EDO.6: 1 residues within 4Å: Chain A: Q.215 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.215 EDO.7: 3 residues within 4Å: Chain A: N.135, K.136 Ligands: EDO.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.136 EDO.8: 4 residues within 4Å: Chain A: R.12, S.182, Q.220, N.224 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.12, A:S.182, A:Q.220, A:N.224 Water bridges: A:A.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lillich, F.F. et al., Structure-Based Design of Dual Partial Peroxisome Proliferator-Activated Receptor gamma Agonists/Soluble Epoxide Hydrolase Inhibitors. J.Med.Chem. (2021)

Release Date

2022-07-06

Peptides

Peroxisome proliferator-activated receptor gamma: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peroxisome proliferator-activated receptor gamma

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