SMTL ID : 7p4s.1

BROMODOMAIN OF HUMAN TAF1 (2) WITH naphthyridinone compound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.17 Å

Oligo State

monomer

Ligands

2 x 5LV: 8-[[1-(3-azanylpropyl)piperidin-4-yl]amino]-5-[5-(hydroxymethyl)pyridin-3-yl]-3-methyl-1~{H}-1,7-naphthyridin-2-one(Non-covalent)

5LV.1: 10 residues within 4Å: Chain A: W.28, P.29, V.34, N.35, F.38, V.39, D.41, Y.84, N.85, Y.91 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.34, A:F.38, A:F.38, A:V.39, A:Y.84, A:Y.84 Hydrogen bonds: A:N.35, A:D.41, A:N.85, A:N.85, A:N.85 pi-Stacking: A:Y.91, A:Y.91 5LV.2: 2 residues within 4Å: Chain A: W.28, H.32 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.28 Water bridges: A:W.28 pi-Stacking: A:W.28, A:W.28

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Clegg, M.A. et al., Optimization of Naphthyridones into Selective TATA-Binding Protein Associated Factor 1 (TAF1) Bromodomain Inhibitors. Acs Med.Chem.Lett. (2021)

Release Date

2021-10-13

Peptides

Isoform 2a of Transcription initiation factor TFIID subunit 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Isoform 2a of Transcription initiation factor TFIID subunit 1