SMTL ID : 7p5j.1

Cryo-EM structure of human TTYH1 in GDN

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: N.131, S.135, H.139, S.199, L.201 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.139 NAG-NAG.2: 6 residues within 4Å: Chain B: N.131, H.132, S.135, D.138, S.199, L.201 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.135, B:S.135, B:D.138

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 2 residues within 4Å: Chain A: Q.37, N.285 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.37, A:N.285 NAG.4: 3 residues within 4Å: Chain A: E.352, N.356 Chain B: Q.314 No protein-ligand interaction detected (PLIP) NAG.5: 1 residues within 4Å: Chain B: N.285 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.285 NAG.6: 5 residues within 4Å: Chain A: S.309, N.310, Q.313 Chain B: E.352, N.356 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:N.356, A:S.309, A:S.309

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sukalskaia, A. et al., Cryo-EM structures of the TTYH family reveal a novel architecture for lipid interactions. Nat Commun (2021)

Release Date

2021-08-11

Peptides

Protein tweety homolog 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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Protein tweety homolog 1