SMTL ID : 7p6m.1

Hydrogenated refolded hen egg-white lysozyme

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 0.89 Å

Oligo State

monomer

Ligands

8 x NO3: NITRATE ION(Non-functional Binders)

NO3.1: 5 residues within 4Å: Chain A: N.66, N.75, N.78, I.79, P.80 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.66, A:N.75, A:N.78 NO3.2: 3 residues within 4Å: Chain A: W.63, R.74 Ligands: NO3.8 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.74, A:R.74 NO3.3: 6 residues within 4Å: Chain A: A.12, R.15, H.16, D.88, I.89, T.90 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.15, A:R.15, A:D.88, A:D.88, A:T.90 NO3.4: 7 residues within 4Å: Chain A: Y.24, N.104, G.105, M.106, N.107, W.112, K.117 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.24, A:Y.24, A:M.106, A:N.107, A:N.107, A:N.107, A:K.117 NO3.6: 4 residues within 4Å: Chain A: R.62, P.71, G.72 Ligands: NO3.8 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.62, A:P.71 Water bridges: A:R.74, A:R.74 NO3.8: 5 residues within 4Å: Chain A: R.62, W.63, R.74 Ligands: NO3.2, NO3.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.63, A:R.74 Water bridges: A:R.74 NO3.9: 5 residues within 4Å: Chain A: N.66, D.67, P.80, C.81, S.82 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:C.81, A:S.82 NO3.10: 4 residues within 4Å: Chain A: F.35, A.111, N.114, R.115 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.111 Water bridges: A:F.35

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.5: 7 residues within 4Å: Chain A: S.25, L.26, G.27, N.28, V.121, Q.122, I.125 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Q.122 Hydrogen bonds: A:L.26, A:G.27 ACT.7: 4 residues within 4Å: Chain A: G.5, R.6, C.7, E.8 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:C.7, A:E.8 Water bridges: A:R.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ramos, J. et al., The impact of folding modes and deuteration on the atomic resolution structure of hen egg-white lysozyme. Acta Crystallogr D Struct Biol (2021)

Release Date

2021-12-22

Peptides

Lysozyme C: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lysozyme C

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