SMTL ID : 7p6s.1

Crystal structure of the FimH-binding decoy module of human glycoprotein 2 (GP2) (crystal form II)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

monomer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: F.32, N.37, G.63, W.64 2 PLIP interactions: 2 interactions with chain A Water bridges: A:W.64, A:W.64 NAG.2: 3 residues within 4Å: Chain A: W.92, N.94, G.95 2 PLIP interactions: 2 interactions with chain A Water bridges: A:N.94, A:N.94

1 x 9JE: pentane-1,5-diol(Non-covalent)

9JE.3: 9 residues within 4Å: Chain A: D.88, A.89, W.113, F.119, W.120, W.143, C.144, N.145, L.146 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:D.88, A:W.113 Hydrogen bonds: A:D.88, A:W.120, A:N.145, A:N.145 Water bridges: A:W.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stsiapanava, A. et al., Structure of the decoy module of human glycoprotein 2 and uromodulin and its interaction with bacterial adhesin FimH. Nat.Struct.Mol.Biol. (2022)

Release Date

2022-03-16

Peptides

Isoform Alpha of Pancreatic secretory granule membrane major glycoprotein GP2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Isoform Alpha of Pancreatic secretory granule membrane major glycoprotein GP2

Related Entries With Identical Sequence