SMTL ID : 7p6t.1

Crystal structure of the FimH-binding decoy module of human glycoprotein 2 (GP2) (crystal form III)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: H.29, F.32, N.37, G.63 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.37 NAG.2: 3 residues within 4Å: Chain A: W.92, N.94, G.95 4 PLIP interactions: 4 interactions with chain A Water bridges: A:N.94, A:N.94, A:N.94, A:N.94 NAG.3: 4 residues within 4Å: Chain A: N.106, E.123, L.125 Ligands: 9D2.8 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.106, A:E.123

5 x 9D2: 2-ethyl-2-(hydroxymethyl)propane-1,3-diol(Non-covalent)

9D2.4: 10 residues within 4Å: Chain A: L.41, E.43, F.45, R.46, C.57, D.58, N.60, M.61, Y.65, R.147 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.41 Hydrogen bonds: A:R.46, A:R.147 Water bridges: A:E.43, A:N.60, A:Y.65, A:Y.65, A:R.147, A:R.147 9D2.5: 6 residues within 4Å: Chain A: T.78, C.79, V.80, Q.81, H.112, C.117 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.80 9D2.6: 3 residues within 4Å: Chain A: L.100, G.101, D.102 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.102, A:D.102 9D2.7: 8 residues within 4Å: Chain A: D.88, A.89, W.113, W.120, W.143, C.144, N.145, L.146 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.113, A:W.120 Hydrogen bonds: A:D.88, A:D.88, A:W.143, A:N.145 9D2.8: 11 residues within 4Å: Chain A: L.18, D.19, C.20, G.21, A.22, P.23, W.64, I.104, L.125, R.137 Ligands: NAG.3 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:L.18, A:D.19, A:D.19, A:C.20, A:G.21, A:R.137, A:R.137

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stsiapanava, A. et al., Structure of the decoy module of human glycoprotein 2 and uromodulin and its interaction with bacterial adhesin FimH. Nat.Struct.Mol.Biol. (2022)

Release Date

2022-03-16

Peptides

Isoform Alpha of Pancreatic secretory granule membrane major glycoprotein GP2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Isoform Alpha of Pancreatic secretory granule membrane major glycoprotein GP2

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