SMTL ID : 7p72.1

The PDZ domain of SNX27 complexed with the PDZ-binding motif of MERS-E

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

hetero-1-1-mer

Ligands

5 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain A: G.137, V.138, E.140 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:G.137, A:V.138, A:E.140, H2O.4, H2O.9 CA.2: 3 residues within 4Å: Chain A: K.175, L.178, E.183 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:K.175, A:L.178, A:E.183, H2O.9 CA.3: 4 residues within 4Å: Chain A: M.205, G.207, G.209, D.249 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:G.207, A:G.209, A:D.249 CA.4: 5 residues within 4Å: Chain A: G.289, R.292, K.293, G.294, E.334 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:G.289, A:R.292, A:E.334, H2O.5, H2O.7 CA.5: 4 residues within 4Å: Chain A: M.365, G.367, G.369, D.409 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:M.365, A:G.367, A:G.369, A:D.409, A:D.409

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 9 residues within 4Å: Chain A: C.220, S.221, R.222, T.223, R.266, V.309, L.346, C.349, K.353 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.266, A:K.353 Water bridges: A:C.220, A:R.222, A:N.224, A:N.224 GOL.7: 6 residues within 4Å: Chain A: A.267, E.268, V.272, R.307, S.308, H.311 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.270, A:S.308, A:S.308, A:S.308 Water bridges: A:H.311

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gogl, G. et al., Quantitative fragmentomics allow affinity mapping of interactomes. Nat Commun (2022)

Release Date

2022-07-27

Peptides

Sorting nexin-27,Annexin A2: A
Envelope small membrane protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Sorting nexin-27,Annexin A2

Envelope small membrane protein