SMTL ID : 7p7d.1

Rabbit muscle Glycogen Phosphorylase T state

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

homo-dimer

Ligands

42 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 1 residues within 4Å: Chain A: N.589 Ligand excluded by PLIP DMS.2: 6 residues within 4Å: Chain A: W.61, I.62, Q.65, R.187, T.234 Chain B: V.34 Ligand excluded by PLIP DMS.3: 3 residues within 4Å: Chain A: H.195, W.209, R.345 Ligand excluded by PLIP DMS.4: 4 residues within 4Å: Chain A: Q.213, V.215, A.266, K.288 Ligand excluded by PLIP DMS.5: 5 residues within 4Å: Chain A: R.60, N.95, L.96, R.228, N.230 Ligand excluded by PLIP DMS.6: 5 residues within 4Å: Chain A: L.543, Y.547, F.638, L.639, E.640 Ligand excluded by PLIP DMS.7: 5 residues within 4Å: Chain A: E.699, E.700, F.702, F.703, M.794 Ligand excluded by PLIP DMS.8: 8 residues within 4Å: Chain A: R.421, M.422, T.460, I.461, F.462, K.463, D.464, F.465 Ligand excluded by PLIP DMS.9: 6 residues within 4Å: Chain A: I.525, R.526, A.529, P.788, R.789, T.792 Ligand excluded by PLIP DMS.10: 5 residues within 4Å: Chain A: R.513, E.695, E.696, A.697, G.698 Ligand excluded by PLIP DMS.11: 5 residues within 4Å: Chain A: E.20, N.24, D.55, H.56 Chain B: F.31 Ligand excluded by PLIP DMS.12: 3 residues within 4Å: Chain A: N.26, H.30, F.31 Ligand excluded by PLIP DMS.13: 4 residues within 4Å: Chain A: E.171 Chain B: F.246, G.255, Y.256 Ligand excluded by PLIP DMS.14: 7 residues within 4Å: Chain A: L.261, D.262, N.264, L.265 Chain B: L.265, N.268 Ligands: DMS.35 Ligand excluded by PLIP DMS.15: 3 residues within 4Å: Chain A: P.413, G.414, D.415 Ligand excluded by PLIP DMS.16: 2 residues within 4Å: Chain A: E.790, R.793 Ligand excluded by PLIP DMS.17: 3 residues within 4Å: Chain A: T.191, P.193, L.216 Ligand excluded by PLIP DMS.18: 4 residues within 4Å: Chain A: Y.785, P.788, W.791, T.792 Ligand excluded by PLIP DMS.19: 4 residues within 4Å: Chain A: Y.274, K.283, L.285 Chain B: I.257 Ligand excluded by PLIP DMS.20: 5 residues within 4Å: Chain A: Y.720, H.761, H.762, D.763, R.764 Ligand excluded by PLIP DMS.21: 3 residues within 4Å: Chain A: F.280, E.281, R.432 Ligand excluded by PLIP DMS.22: 1 residues within 4Å: Chain B: N.589 Ligand excluded by PLIP DMS.23: 6 residues within 4Å: Chain A: V.34 Chain B: W.61, I.62, Q.65, R.187, T.234 Ligand excluded by PLIP DMS.24: 3 residues within 4Å: Chain B: H.195, W.209, R.345 Ligand excluded by PLIP DMS.25: 4 residues within 4Å: Chain B: Q.213, V.215, A.266, K.288 Ligand excluded by PLIP DMS.26: 5 residues within 4Å: Chain B: R.60, N.95, L.96, R.228, N.230 Ligand excluded by PLIP DMS.27: 5 residues within 4Å: Chain B: L.543, Y.547, F.638, L.639, E.640 Ligand excluded by PLIP DMS.28: 5 residues within 4Å: Chain B: E.699, E.700, F.702, F.703, M.794 Ligand excluded by PLIP DMS.29: 8 residues within 4Å: Chain B: R.421, M.422, T.460, I.461, F.462, K.463, D.464, F.465 Ligand excluded by PLIP DMS.30: 6 residues within 4Å: Chain B: I.525, R.526, A.529, P.788, R.789, T.792 Ligand excluded by PLIP DMS.31: 5 residues within 4Å: Chain B: R.513, E.695, E.696, A.697, G.698 Ligand excluded by PLIP DMS.32: 5 residues within 4Å: Chain A: F.31 Chain B: E.20, N.24, D.55, H.56 Ligand excluded by PLIP DMS.33: 3 residues within 4Å: Chain B: N.26, H.30, F.31 Ligand excluded by PLIP DMS.34: 4 residues within 4Å: Chain A: F.246, G.255, Y.256 Chain B: E.171 Ligand excluded by PLIP DMS.35: 7 residues within 4Å: Chain A: L.265, N.268 Chain B: L.261, D.262, N.264, L.265 Ligands: DMS.14 Ligand excluded by PLIP DMS.36: 3 residues within 4Å: Chain B: P.413, G.414, D.415 Ligand excluded by PLIP DMS.37: 2 residues within 4Å: Chain B: E.790, R.793 Ligand excluded by PLIP DMS.38: 3 residues within 4Å: Chain B: T.191, P.193, L.216 Ligand excluded by PLIP DMS.39: 4 residues within 4Å: Chain B: Y.785, P.788, W.791, T.792 Ligand excluded by PLIP DMS.40: 4 residues within 4Å: Chain A: I.257 Chain B: Y.274, K.283, L.285 Ligand excluded by PLIP DMS.41: 5 residues within 4Å: Chain B: Y.720, H.761, H.762, D.763, R.764 Ligand excluded by PLIP DMS.42: 3 residues within 4Å: Chain B: F.280, E.281, R.432 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Leonidas, D.D. et al., Glycogen phosphorylase revisited: extending the resolution of the R- and T-state structures of the free enzyme and in complex with allosteric activators. Acta Crystallogr.,Sect.F (2021)

Release Date

2021-07-28

Peptides

Glycogen phosphorylase, muscle form: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Glycogen phosphorylase, muscle form