SMTL ID : 7p8h.1

chicken GRIFIN bound to blood group tetrasaccharide B (type 1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.13 Å

Oligo State

homo-dimer

Ligands

2 x NAG- GAL- FUC- GLA: alpha-L-fucopyranose-(1-2)-[alpha-D-galactopyranose-(1-3)]beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-GAL-FUC-GLA.1: 11 residues within 4Å: Chain B: E.33, H.47, N.49, R.51, R.56, V.58, N.60, F.62, W.67, E.70, N.124 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:H.47, B:R.51, B:N.60, B:E.70, B:W.67, B:R.51, B:R.51, B:E.70 Water bridges: B:N.49, B:R.51, B:N.49 NAG-GAL-FUC-GLA.2: 10 residues within 4Å: Chain A: E.33, H.47, N.49, R.51, V.58, N.60, F.62, W.67, E.70, N.124 4 PLIP interactions: 4 interactions with chain A Water bridges: A:W.67, A:N.49, A:R.51, A:W.67, A:E.33, A:E.33, A:E.33, A:N.49, A:N.49, A:N.124, A:N.124, A:E.70 Hydrogen bonds: A:H.47, A:R.51, A:N.60, A:E.70, A:W.67, A:R.51, A:R.51, A:E.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ruiz, F.M. et al., Structural Characterization of Rat Galectin-5, an N-Tailed Monomeric Proto-Type-like Galectin. Biomolecules (2021)

Release Date

2022-03-02

Peptides

Galectin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Galectin

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