SMTL ID : 7p8j.1 (1 other biounit)

Receptor-binding domain (RBD) of the spike protein of the bat coronavirus RaTG13 virus in complex with the extracellular domain of human angiotensin-converting enzyme 2 (ACE2) - Crystal form 2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 6.59 Å

Oligo State

hetero-1-1-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: N.37, T.39, E.41, N.42, Q.324 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 2 residues within 4Å: Chain A: K.297, N.530 No protein-ligand interaction detected (PLIP)

3 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.2: 1 residues within 4Å: Chain A: N.74 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.98 NAG-NAG-BMA.3: 1 residues within 4Å: Chain A: N.416 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.5: 6 residues within 4Å: Chain B: P.21, G.23, E.24, N.27, V.51, S.55 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Castelli, M. et al., Constrained Evolution of SARS-CoV-2 Spike in Rhinolophus affinis Bats. To Be Published

Release Date

2022-08-03

Peptides

Processed angiotensin-converting enzyme 2: A
Spike glycoprotein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Processed angiotensin-converting enzyme 2

Spike glycoprotein

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