SMTL ID : 7p8p.1 (1 other biounit)

Crystal structure of Fhit covalently bound to a nucleotide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.34 Å

Oligo State

homo-dimer

Ligands

2 x 6BI: [(2~{R},3~{S},4~{R},5~{R})-5-[6-(ethylamino)purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate(Non-covalent)

6BI.1: 18 residues within 4Å: Chain A: F.5, C.8, I.10, L.25, V.26, N.27, R.28, K.29, H.35, L.37, Q.83, G.89, Q.90, T.91, V.92, N.96, H.98 Ligands: NA.2 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:N.27, A:R.28, A:Q.83, A:T.91, A:T.91, A:V.92, A:N.96, A:N.96, A:N.96 Water bridges: A:K.29, A:H.98, A:H.98 Salt bridges: A:H.98 pi-Stacking: A:F.5 pi-Cation interactions: A:R.28, A:R.28 6BI.3: 20 residues within 4Å: Chain B: F.5, C.8, L.9, I.10, L.25, V.26, N.27, R.28, K.29, H.35, L.37, Q.83, G.89, Q.90, T.91, V.92, N.96, H.98, H.120, M.135 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:N.27, B:R.28, B:R.28, B:R.28, B:Q.83, B:T.91, B:T.91, B:V.92, B:N.96 Salt bridges: B:H.98 pi-Stacking: B:F.5

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 5 residues within 4Å: Chain A: Q.90, V.92, H.94, N.96 Ligands: 6BI.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.90, A:N.96 Water bridges: A:H.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Herzog, D. et al., Chemical Proteomics of the Tumor Suppressor Fhit Covalently Bound to the Cofactor Ap 3 A Elucidates Its Inhibitory Action on Translation. J.Am.Chem.Soc. (2022)

Release Date

2022-06-01

Peptides

Bis(5'-adenosyl)-triphosphatase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Bis(5'-adenosyl)-triphosphatase

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