- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY 2.20 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
HEM.2: 25 residues within 4Å:- Chain A: R.72, V.73, V.74, H.75, R.112, G.131, F.132, V.146, G.147, N.148, P.158, F.161, G.216, S.217, H.218, L.299, F.334, M.350, R.354, Y.358, T.361, H.362, R.365
- Chain D: M.61, D.65
30 PLIP interactions:30 interactions with chain A,- Hydrophobic interactions: A:V.73, A:V.74, A:H.75, A:V.146, A:N.148, A:P.158, A:F.161, A:F.161, A:F.161, A:F.161, A:F.161, A:L.299, A:F.334, A:R.354, A:Y.358, A:Y.358
- Hydrogen bonds: A:T.361
- Water bridges: A:A.133, A:I.332, A:R.365
- Salt bridges: A:R.72, A:R.72, A:R.112, A:H.362, A:R.365
- pi-Stacking: A:H.75, A:F.153, A:F.161
- pi-Cation interactions: A:R.354
- Metal complexes: A:Y.358
HEM.4: 25 residues within 4Å:- Chain B: R.72, V.73, V.74, H.75, R.112, G.131, F.132, V.146, G.147, N.148, P.158, F.161, G.216, S.217, H.218, L.299, F.334, M.350, R.354, Y.358, T.361, H.362, R.365
- Chain C: M.61, D.65
30 PLIP interactions:30 interactions with chain B,- Hydrophobic interactions: B:V.73, B:V.74, B:H.75, B:V.146, B:N.148, B:P.158, B:F.161, B:F.161, B:F.161, B:F.161, B:F.161, B:L.299, B:F.334, B:R.354, B:Y.358, B:Y.358
- Hydrogen bonds: B:T.361
- Water bridges: B:A.133, B:I.332, B:R.365
- Salt bridges: B:R.72, B:R.72, B:R.112, B:H.362, B:R.365
- pi-Stacking: B:H.75, B:F.153, B:F.161
- pi-Cation interactions: B:R.354
- Metal complexes: B:Y.358
HEM.6: 25 residues within 4Å:- Chain B: M.61, D.65
- Chain C: R.72, V.73, V.74, H.75, R.112, G.131, F.132, V.146, G.147, N.148, P.158, F.161, G.216, S.217, H.218, L.299, F.334, M.350, R.354, Y.358, T.361, H.362, R.365
31 PLIP interactions:31 interactions with chain C,- Hydrophobic interactions: C:V.73, C:V.74, C:H.75, C:V.146, C:N.148, C:P.158, C:F.161, C:F.161, C:F.161, C:F.161, C:F.161, C:L.299, C:F.334, C:R.354, C:Y.358, C:Y.358
- Hydrogen bonds: C:T.361, C:T.361
- Water bridges: C:A.133, C:I.332, C:R.365
- Salt bridges: C:R.72, C:R.72, C:R.112, C:H.362, C:R.365
- pi-Stacking: C:H.75, C:F.153, C:F.161
- pi-Cation interactions: C:R.354
- Metal complexes: C:Y.358
HEM.8: 25 residues within 4Å:- Chain A: M.61, D.65
- Chain D: R.72, V.73, V.74, H.75, R.112, G.131, F.132, V.146, G.147, N.148, P.158, F.161, G.216, S.217, H.218, L.299, F.334, M.350, R.354, Y.358, T.361, H.362, R.365
31 PLIP interactions:31 interactions with chain D,- Hydrophobic interactions: D:V.73, D:V.74, D:H.75, D:V.146, D:N.148, D:P.158, D:F.161, D:F.161, D:F.161, D:F.161, D:F.161, D:L.299, D:F.334, D:R.354, D:Y.358, D:Y.358
- Hydrogen bonds: D:T.361, D:T.361
- Water bridges: D:A.133, D:I.332, D:R.365
- Salt bridges: D:R.72, D:R.72, D:R.112, D:H.362, D:R.365
- pi-Stacking: D:H.75, D:F.153, D:F.161
- pi-Cation interactions: D:R.354
- Metal complexes: D:Y.358
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chen, S. et al., Interaction of human erythrocyte catalase with air-water interface in cryoEM. Microscopy (Oxf) (2022)
- Release Date
- 2021-08-25
- Peptides
- Catalase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY 2.20 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chen, S. et al., Interaction of human erythrocyte catalase with air-water interface in cryoEM. Microscopy (Oxf) (2022)
- Release Date
- 2021-08-25
- Peptides
- Catalase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D