SMTL ID : 7pae.1

The crystal structure of Deltarasin in complex with PDE6D

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x O7T: deltarasin(Non-covalent)

O7T.1: 24 residues within 4Å: Chain A: L.33, M.36, L.38, W.48, L.54, V.65, I.69, L.70, C.72, K.73, R.77, L.79, Q.94, V.96, L.103, E.104, W.106, I.125, M.133, I.145, T.147, L.163, Y.165 Ligands: ACY.2 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:L.33, A:L.38, A:L.38, A:W.48, A:L.54, A:V.65, A:V.65, A:I.69, A:I.69, A:L.70, A:L.79, A:V.96, A:V.96, A:L.103, A:I.125, A:I.145, A:I.145, A:Y.165 Hydrogen bonds: A:R.77, A:Q.94

1 x ACY: ACETIC ACID(Non-functional Binders)

ACY.2: 5 residues within 4Å: Chain A: E.104, W.106, A.127, M.133 Ligands: O7T.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Canovas Nunes, S. et al., Validation of a small molecule inhibitor of PDE6D-RAS interaction with favorable anti-leukemic effects. Blood Cancer J (2022)

Release Date

2022-06-08

Peptides

Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta

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