SMTL ID : 7paf.1

Streptococcus pneumoniae choline importer LicB in lipid nanodiscs

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

1 x PGT: (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE(Non-covalent)

PGT.1: 14 residues within 4Å: Chain B: L.19, T.22, V.23, Y.26, F.262, F.266, L.267 Chain D: L.19, T.22, V.23, Y.26, F.228, F.266, L.267 15 PLIP interactions: 10 interactions with chain B, 5 interactions with chain D Hydrophobic interactions: B:L.19, B:T.22, B:V.23, B:Y.26, B:F.262, B:F.266, B:F.266, B:F.266, B:L.267, D:L.19, D:V.23, D:F.228, D:F.266, D:L.267 Hydrogen bonds: B:Y.26

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barland, N. et al., Mechanistic basis of choline import involved in teichoic acids and lipopolysaccharide modification. Sci Adv (2022)

Release Date

2022-03-16

Peptides

Nanobody: AC
LicB protein: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

C
C

B
A

D
D

Membrane

We predict this structure to be a membrane protein.
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Nanobody

LicB protein

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