SMTL ID : 7pag.1

The pore conformation of lymphocyte perforin

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.409, T.412, A.413, D.415, N.434 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.409, A:T.412, A:A.413, A:D.415 CA.2: 5 residues within 4Å: Chain A: D.409, D.415, D.463, A.464, D.465 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.409, A:D.415, A:D.463, A:A.464 CA.3: 5 residues within 4Å: Chain A: G.408, Y.410, D.463, D.465, D.471 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:G.408, A:D.465

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 3 residues within 4Å: Chain A: N.182, N.184, S.186 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.182

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ivanova, M.E. et al., The pore conformation of lymphocyte perforin. Sci Adv (2022)

Release Date

2022-02-16

Peptides

Perforin-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Perforin-1