SMTL ID : 7pca.1

Functional and structural characterization of redox sensitive superfolder green fluorescent protein and variants

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.05 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: E.93, R.94, T.95, K.160, Y.180, Q.181, Q.182 Ligands: EOH.5 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.94, A:R.94, A:T.95, A:T.106, A:N.162 GOL.4: 5 residues within 4Å: Chain A: V.1, S.2, P.190, V.191, L.192 No protein-ligand interaction detected (PLIP)

2 x EOH: ETHANOL(Non-functional Binders)

EOH.2: 5 residues within 4Å: Chain A: K.3, G.4, E.6, L.7, P.87 No protein-ligand interaction detected (PLIP) EOH.5: 5 residues within 4Å: Chain A: E.93, K.156, K.160, Q.182 Ligands: GOL.1 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Q.182 Hydrogen bonds: A:Q.182

2 x ARF: FORMAMIDE(Non-covalent)

ARF.3: 3 residues within 4Å: Chain A: H.137, K.138, E.170 1 PLIP interactions: 1 interactions with chain A Water bridges: A:E.170 ARF.6: 3 residues within 4Å: Chain A: E.88, I.186, G.187 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Heimsch, K.C. et al., Structure and Function of Redox-Sensitive Superfolder Green Fluorescent Protein Variant. Antioxid.Redox Signal. (2022)

Release Date

2022-02-16

Peptides

Green fluorescent protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Green fluorescent protein