SMTL ID : 7pen.1 (1 other biounit)

Crystal Structure of Two-Domain Laccase mutant Y230A from Streptomyces griseoflavus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-trimer

Ligands

12 x CU: COPPER (II) ION(Non-covalent)

CU.1: 4 residues within 4Å: Chain A: H.232, C.289, H.294, M.299 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.232, A:C.289, A:H.294 CU.2: 3 residues within 4Å: Chain A: H.237, H.288 Chain C: H.159 4 PLIP interactions: 2 interactions with chain A, 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: A:H.237, A:H.288, C:H.159, H2O.5 CU.3: 5 residues within 4Å: Chain A: H.103, H.105, H.157 Chain B: H.290 Ligands: CU.4 4 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: A:H.105, A:H.157, B:H.290, H2O.14 CU.4: 5 residues within 4Å: Chain A: H.103, H.105 Chain B: H.235, H.237 Ligands: CU.3 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Metal complexes: A:H.103, B:H.235 CU.6: 4 residues within 4Å: Chain B: H.232, C.289, H.294, M.299 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.232, B:C.289, B:H.294 CU.7: 3 residues within 4Å: Chain A: H.159 Chain B: H.237, H.288 4 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: B:H.237, B:H.288, A:H.159, H2O.14 CU.8: 5 residues within 4Å: Chain B: H.103, H.105, H.157 Chain C: H.290 Ligands: CU.9 4 PLIP interactions: 2 interactions with chain B, 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: B:H.105, B:H.157, C:H.290, H2O.22 CU.9: 5 residues within 4Å: Chain B: H.103, H.105 Chain C: H.235, H.237 Ligands: CU.8 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B Metal complexes: C:H.235, B:H.103 CU.10: 4 residues within 4Å: Chain A: H.290 Chain C: H.103, H.105, H.157 4 PLIP interactions: 1 interactions with chain A, 2 interactions with chain C, 1 Ligand-Water interactions Metal complexes: A:H.290, C:H.105, C:H.157, H2O.5 CU.11: 4 residues within 4Å: Chain A: H.235, H.237 Chain C: H.103, H.105 3 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: C:H.103, A:H.235, H2O.18 CU.12: 4 residues within 4Å: Chain C: H.232, C.289, H.294, M.299 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.232, C:C.289, C:H.294 CU.13: 4 residues within 4Å: Chain B: H.159 Chain C: H.235, H.237, H.288 4 PLIP interactions: 1 interactions with chain B, 2 interactions with chain C, 1 Ligand-Water interactions Metal complexes: B:H.159, C:H.237, C:H.288, H2O.22

1 x NA: SODIUM ION(Non-functional Binders)

NA.5: 0 residues within 4Å: (No contacts) 3 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B, 1 interactions with chain A Water bridges: C:D.243, B:D.243, A:D.243

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kolyadenko, I. et al., Engineering the Catalytic Properties of Two-Domain Laccase from Streptomyces griseoflavus Ac-993. Int J Mol Sci (2021)

Release Date

2022-01-19

Peptides

Two-domain laccase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Two-domain laccase

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