SMTL ID : 7pf9.1

SynFtn Variant E141D

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

homo-24-mer

Ligands

24 x NA: SODIUM ION(Non-functional Binders)

NA.1: 3 residues within 4Å: Ligands: NA.5, NA.57, NA.61 Ligand excluded by PLIP NA.5: 3 residues within 4Å: Ligands: NA.1, NA.57, NA.61 Ligand excluded by PLIP NA.9: 3 residues within 4Å: Ligands: NA.13, NA.49, NA.53 Ligand excluded by PLIP NA.13: 3 residues within 4Å: Ligands: NA.9, NA.49, NA.53 Ligand excluded by PLIP NA.17: 3 residues within 4Å: Ligands: NA.21, NA.81, NA.85 Ligand excluded by PLIP NA.21: 3 residues within 4Å: Ligands: NA.17, NA.81, NA.85 Ligand excluded by PLIP NA.25: 3 residues within 4Å: Ligands: NA.29, NA.89, NA.93 Ligand excluded by PLIP NA.29: 3 residues within 4Å: Ligands: NA.25, NA.89, NA.93 Ligand excluded by PLIP NA.33: 3 residues within 4Å: Ligands: NA.37, NA.65, NA.69 Ligand excluded by PLIP NA.37: 3 residues within 4Å: Ligands: NA.33, NA.65, NA.69 Ligand excluded by PLIP NA.41: 3 residues within 4Å: Ligands: NA.45, NA.73, NA.77 Ligand excluded by PLIP NA.45: 3 residues within 4Å: Ligands: NA.41, NA.73, NA.77 Ligand excluded by PLIP NA.49: 3 residues within 4Å: Ligands: NA.9, NA.13, NA.53 Ligand excluded by PLIP NA.53: 3 residues within 4Å: Ligands: NA.9, NA.13, NA.49 Ligand excluded by PLIP NA.57: 3 residues within 4Å: Ligands: NA.1, NA.5, NA.61 Ligand excluded by PLIP NA.61: 3 residues within 4Å: Ligands: NA.1, NA.5, NA.57 Ligand excluded by PLIP NA.65: 3 residues within 4Å: Ligands: NA.33, NA.37, NA.69 Ligand excluded by PLIP NA.69: 3 residues within 4Å: Ligands: NA.33, NA.37, NA.65 Ligand excluded by PLIP NA.73: 3 residues within 4Å: Ligands: NA.41, NA.45, NA.77 Ligand excluded by PLIP NA.77: 3 residues within 4Å: Ligands: NA.41, NA.45, NA.73 Ligand excluded by PLIP NA.81: 3 residues within 4Å: Ligands: NA.17, NA.21, NA.85 Ligand excluded by PLIP NA.85: 3 residues within 4Å: Ligands: NA.17, NA.21, NA.81 Ligand excluded by PLIP NA.89: 3 residues within 4Å: Ligands: NA.25, NA.29, NA.93 Ligand excluded by PLIP NA.93: 3 residues within 4Å: Ligands: NA.25, NA.29, NA.89 Ligand excluded by PLIP

72 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: R.93, T.105 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Chain A: L.99, A.100 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain A: R.93, W.96, D.97, S.101 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain B: R.93, T.105 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain B: L.99, A.100 Ligand excluded by PLIP CL.8: 4 residues within 4Å: Chain B: R.93, W.96, D.97, S.101 Ligand excluded by PLIP CL.10: 2 residues within 4Å: Chain C: R.93, T.105 Ligand excluded by PLIP CL.11: 2 residues within 4Å: Chain C: L.99, A.100 Ligand excluded by PLIP CL.12: 4 residues within 4Å: Chain C: R.93, W.96, D.97, S.101 Ligand excluded by PLIP CL.14: 2 residues within 4Å: Chain D: R.93, T.105 Ligand excluded by PLIP CL.15: 2 residues within 4Å: Chain D: L.99, A.100 Ligand excluded by PLIP CL.16: 4 residues within 4Å: Chain D: R.93, W.96, D.97, S.101 Ligand excluded by PLIP CL.18: 2 residues within 4Å: Chain E: R.93, T.105 Ligand excluded by PLIP CL.19: 2 residues within 4Å: Chain E: L.99, A.100 Ligand excluded by PLIP CL.20: 4 residues within 4Å: Chain E: R.93, W.96, D.97, S.101 Ligand excluded by PLIP CL.22: 2 residues within 4Å: Chain F: R.93, T.105 Ligand excluded by PLIP CL.23: 2 residues within 4Å: Chain F: L.99, A.100 Ligand excluded by PLIP CL.24: 4 residues within 4Å: Chain F: R.93, W.96, D.97, S.101 Ligand excluded by PLIP CL.26: 2 residues within 4Å: Chain G: R.93, T.105 Ligand excluded by PLIP CL.27: 2 residues within 4Å: Chain G: L.99, A.100 Ligand excluded by PLIP CL.28: 4 residues within 4Å: Chain G: R.93, W.96, D.97, S.101 Ligand excluded by PLIP CL.30: 2 residues within 4Å: Chain H: R.93, T.105 Ligand excluded by PLIP CL.31: 2 residues within 4Å: Chain H: L.99, A.100 Ligand excluded by PLIP CL.32: 4 residues within 4Å: Chain H: R.93, W.96, D.97, S.101 Ligand excluded by PLIP CL.34: 2 residues within 4Å: Chain I: R.93, T.105 Ligand excluded by PLIP CL.35: 2 residues within 4Å: Chain I: L.99, A.100 Ligand excluded by PLIP CL.36: 4 residues within 4Å: Chain I: R.93, W.96, D.97, S.101 Ligand excluded by PLIP CL.38: 2 residues within 4Å: Chain J: R.93, T.105 Ligand excluded by PLIP CL.39: 2 residues within 4Å: Chain J: L.99, A.100 Ligand excluded by PLIP CL.40: 4 residues within 4Å: Chain J: R.93, W.96, D.97, S.101 Ligand excluded by PLIP CL.42: 2 residues within 4Å: Chain K: R.93, T.105 Ligand excluded by PLIP CL.43: 2 residues within 4Å: Chain K: L.99, A.100 Ligand excluded by PLIP CL.44: 4 residues within 4Å: Chain K: R.93, W.96, D.97, S.101 Ligand excluded by PLIP CL.46: 2 residues within 4Å: Chain L: R.93, T.105 Ligand excluded by PLIP CL.47: 2 residues within 4Å: Chain L: L.99, A.100 Ligand excluded by PLIP CL.48: 4 residues within 4Å: Chain L: R.93, W.96, D.97, S.101 Ligand excluded by PLIP CL.50: 2 residues within 4Å: Chain M: R.93, T.105 Ligand excluded by PLIP CL.51: 2 residues within 4Å: Chain M: L.99, A.100 Ligand excluded by PLIP CL.52: 4 residues within 4Å: Chain M: R.93, W.96, D.97, S.101 Ligand excluded by PLIP CL.54: 2 residues within 4Å: Chain N: R.93, T.105 Ligand excluded by PLIP CL.55: 2 residues within 4Å: Chain N: L.99, A.100 Ligand excluded by PLIP CL.56: 4 residues within 4Å: Chain N: R.93, W.96, D.97, S.101 Ligand excluded by PLIP CL.58: 2 residues within 4Å: Chain O: R.93, T.105 Ligand excluded by PLIP CL.59: 2 residues within 4Å: Chain O: L.99, A.100 Ligand excluded by PLIP CL.60: 4 residues within 4Å: Chain O: R.93, W.96, D.97, S.101 Ligand excluded by PLIP CL.62: 2 residues within 4Å: Chain P: R.93, T.105 Ligand excluded by PLIP CL.63: 2 residues within 4Å: Chain P: L.99, A.100 Ligand excluded by PLIP CL.64: 4 residues within 4Å: Chain P: R.93, W.96, D.97, S.101 Ligand excluded by PLIP CL.66: 2 residues within 4Å: Chain Q: R.93, T.105 Ligand excluded by PLIP CL.67: 2 residues within 4Å: Chain Q: L.99, A.100 Ligand excluded by PLIP CL.68: 4 residues within 4Å: Chain Q: R.93, W.96, D.97, S.101 Ligand excluded by PLIP CL.70: 2 residues within 4Å: Chain R: R.93, T.105 Ligand excluded by PLIP CL.71: 2 residues within 4Å: Chain R: L.99, A.100 Ligand excluded by PLIP CL.72: 4 residues within 4Å: Chain R: R.93, W.96, D.97, S.101 Ligand excluded by PLIP CL.74: 2 residues within 4Å: Chain S: R.93, T.105 Ligand excluded by PLIP CL.75: 2 residues within 4Å: Chain S: L.99, A.100 Ligand excluded by PLIP CL.76: 4 residues within 4Å: Chain S: R.93, W.96, D.97, S.101 Ligand excluded by PLIP CL.78: 2 residues within 4Å: Chain T: R.93, T.105 Ligand excluded by PLIP CL.79: 2 residues within 4Å: Chain T: L.99, A.100 Ligand excluded by PLIP CL.80: 4 residues within 4Å: Chain T: R.93, W.96, D.97, S.101 Ligand excluded by PLIP CL.82: 2 residues within 4Å: Chain U: R.93, T.105 Ligand excluded by PLIP CL.83: 2 residues within 4Å: Chain U: L.99, A.100 Ligand excluded by PLIP CL.84: 4 residues within 4Å: Chain U: R.93, W.96, D.97, S.101 Ligand excluded by PLIP CL.86: 2 residues within 4Å: Chain V: R.93, T.105 Ligand excluded by PLIP CL.87: 2 residues within 4Å: Chain V: L.99, A.100 Ligand excluded by PLIP CL.88: 4 residues within 4Å: Chain V: R.93, W.96, D.97, S.101 Ligand excluded by PLIP CL.90: 2 residues within 4Å: Chain W: R.93, T.105 Ligand excluded by PLIP CL.91: 2 residues within 4Å: Chain W: L.99, A.100 Ligand excluded by PLIP CL.92: 4 residues within 4Å: Chain W: R.93, W.96, D.97, S.101 Ligand excluded by PLIP CL.94: 2 residues within 4Å: Chain X: R.93, T.105 Ligand excluded by PLIP CL.95: 2 residues within 4Å: Chain X: L.99, A.100 Ligand excluded by PLIP CL.96: 4 residues within 4Å: Chain X: R.93, W.96, D.97, S.101 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bradley, J.M. et al., Key carboxylate residues for iron transit through the prokaryotic ferritin Syn Ftn. Microbiology (Reading, Engl.) (2021)

Release Date

2021-12-08

Peptides

Ferritin: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

I
A

J
A

K
A

L
A

M
A

N
A

O
A

P
A

Q
A

R
A

S
A

T
A

U
A

V
A

W
A

X
A

Ferritin

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