SMTL ID : 7pgu.1

Autoinhibited structure of human neurofibromin isoform 2 stabilized by Zinc.

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

2 x PEV: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE(Non-covalent)

PEV.1: 33 residues within 4Å: Chain A: T.1295, F.1593, Y.1608, A.1610, V.1627, L.1631, Y.1639, I.1641, V.1643, L.1645, T.1648, N.1652, R.1653, F.1654, L.1659, W.1662, F.1663, F.1666, A.1670, Y.1671, V.1674, V.1677, I.1679, W.1685, V.1686, Y.1689, T.1690, L.1697, G.1699, L.1700, R.1705, L.1706, L.1773 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.1593, A:Y.1608, A:Y.1608, A:V.1627, A:I.1641, A:F.1654, A:F.1663, A:Y.1671, A:V.1677, A:Y.1689, A:L.1700 Hydrogen bonds: A:F.1663 PEV.3: 34 residues within 4Å: Chain B: T.1295, F.1593, Y.1608, A.1610, F.1613, V.1627, L.1631, Y.1639, I.1641, V.1643, L.1645, T.1648, N.1652, R.1653, F.1654, L.1659, W.1662, F.1663, F.1666, A.1670, Y.1671, V.1674, V.1677, I.1679, W.1685, V.1686, Y.1689, T.1690, L.1697, G.1699, L.1700, R.1705, L.1706, L.1773 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:Y.1608, B:I.1641, B:F.1654, B:F.1654, B:W.1662, B:F.1663, B:F.1663, B:F.1666, B:Y.1671, B:Y.1671, B:V.1677, B:L.1700 Hydrogen bonds: B:F.1663, B:R.1705 Salt bridges: B:R.1705

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 3 residues within 4Å: Chain A: C.1032, H.1558, H.1576 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.1032, A:H.1558, A:H.1576, H2O.1 ZN.4: 3 residues within 4Å: Chain B: C.1032, H.1558, H.1576 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:C.1032, B:H.1558, B:H.1576, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Naschberger, A. et al., The structure of neurofibromin isoform 2 reveals different functional states. Nature (2021)

Release Date

2021-11-17

Peptides

Neurofibromin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

B
N

Neurofibromin

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