SMTL ID : 7ph0.1

Structure of light-adapted AsLOV2 Q513L

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 0.98 Å

Oligo State

monomer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: V.78, Q.79 Ligands: EDO.6 Ligand excluded by PLIP

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.2: 21 residues within 4Å: Chain A: V.16, T.18, N.25, N.49, C.50, R.51, L.53, Q.54, V.63, I.66, R.67, I.70, L.80, N.82, N.92, F.94, L.96, F.109, I.110, G.111, L.113 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:V.16, A:T.18, A:F.94, A:L.96 Hydrogen bonds: A:N.49, A:C.50, A:Q.54, A:R.67, A:N.82, A:N.82, A:N.92 Water bridges: A:R.51, A:R.51, A:R.60, A:R.60, A:R.67 Salt bridges: A:R.51

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 2 residues within 4Å: Chain A: F.3, L.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.4 Water bridges: A:F.3, A:F.3 GOL.4: 4 residues within 4Å: Chain A: E.75, T.77, H.95, V.129 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.75, A:T.77 Water bridges: A:H.95 GOL.5: 4 residues within 4Å: Chain A: F.3, E.43, L.46, G.47 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.43, A:L.46

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 5 residues within 4Å: Chain A: T.77, V.78, Q.79, E.125 Ligands: CL.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.77, A:Q.79 Water bridges: A:H.119, A:V.120 EDO.7: 3 residues within 4Å: Chain A: T.74, E.75, P.98 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.74, A:E.75 Water bridges: A:T.74, A:E.75

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.8: 2 residues within 4Å: Chain A: G.47, R.48 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dietler, J. et al., Signal transduction in light-oxygen-voltage receptors lacking the active-site glutamine. Nat Commun (2022)

Release Date

2022-05-11

Peptides

NPH1-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

NPH1-1

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