SMTL ID : 7ph7.1

Nanodisc reconstituted MsbA in complex with nanobodies, spin-labeled at position T68C

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

1 x EIW: (2~{R},4~{R},5~{R},6~{R})-6-[(1~{R})-1,2-bis(oxidanyl)ethyl]-4-[(2~{R},3~{S},4~{S},5~{R},6~{R})-6-[(1~{S})-1,2-bis(oxidanyl)ethyl]-4-[(2~{R},3~{S},4~{S},5~{S},6~{R})-6-[(1~{S})-1,2-bis(oxidanyl)ethyl]-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3,5-bis(oxidanyl)oxan-2-yl]oxy-2-[[(2~{R},3~{S},4~{R},5~{R},6~{R})-4-[(3~{R})-3-nonanoyloxytetradecanoyl]oxy-5-[[(3~{R})-3-octanoyloxytetradecanoyl]amino]-6-[[(2~{R},3~{S},4~{S},5~{S},6~{R})-3-oxidanyl-5-[[(3~{R})-3-oxidanylnonanoyl]amino]-4-[(3~{R})-3-oxidanyltetradecanoyl]oxy-6-phosphonooxy-oxan-2-yl]methoxy]-3-phosphonooxy-oxan-2-yl]methoxy]-5-oxidanyl-oxane-2-carboxylic acid(Non-covalent)

EIW.1: 28 residues within 4Å: Chain A: D.52, L.59, R.89, L.182, Q.267, A.270, T.296, F.299, S.300, M.302, I.303, A.304, L.305, R.307 Chain B: D.52, M.55, L.56, L.59, M.86, R.89, A.270, L.278, F.299, S.300, I.303, A.304, M.306, R.307 25 PLIP interactions: 14 interactions with chain B, 11 interactions with chain A Hydrophobic interactions: B:L.56, B:L.59, B:L.59, B:A.270, B:L.278, B:F.299, B:F.299, B:I.303, B:I.303, B:A.304, A:L.59, A:L.59, A:L.182, A:A.270, A:T.296, A:F.299, A:I.303, A:L.305 Hydrogen bonds: B:R.89, A:R.89 Salt bridges: B:R.89, B:R.307, B:R.307, A:R.89, A:R.307

2 x 88T: (1~{R},4~{R},11~{S},14~{S},19~{Z})-19-[2-[2,5-bis(oxidanylidene)pyrrolidin-1-yl]ethylimino]-7,8,17,18-tetraoxa-1,4,11,14-tetrazatricyclo[12.6.2.2^{4,11}]tetracosane-6,9,16-trione(Covalent)

88T.2: 5 residues within 4Å: Chain C: Y.62, F.70, C.71, S.73 Ligands: GD.3 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:S.73 88T.4: 4 residues within 4Å: Chain D: Y.62, F.70, C.71 Ligands: GD.5 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:Y.62

2 x GD: GADOLINIUM ATOM(Non-functional Binders)

GD.3: 1 residues within 4Å: Ligands: 88T.2 No protein-ligand interaction detected (PLIP) GD.5: 1 residues within 4Å: Ligands: 88T.4 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Galazzo, L. et al., The ABC transporter MsbA adopts the wide inward-open conformation in E. coli cells. Sci Adv (2022)

Release Date

2022-08-24

Peptides

ATP-binding transport protein multicopy suppressor of htrB: AB
Nb_MsbA#1: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
Show / Hide

ATP-binding transport protein multicopy suppressor of htrB

Nb_MsbA#1

Related Entries With Identical Sequence