SMTL ID : 7pk8.1

LpxC Inhibitors With Fluoroproline As A Novel Zinc-Binding Group Can Serve As A Novel Class of Antibiotic With Activity Against Multidrug-Resistant Gram-Negative Bacteria

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.91, H.250, D.254 Ligands: 7T5.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.91, A:H.250, A:D.254, A:D.254

1 x 7T5: (2S,4S)-4-fluoranyl-N-[(3R,5R)-5-[[[4-[2-(4-methylphenyl)ethynyl]phenyl]carbonylamino]methyl]-1-(2-methylpropanoyl)pyrrolidin-3-yl]pyrrolidine-2-carboxamide(Non-covalent)

7T5.2: 20 residues within 4Å: Chain A: L.31, M.75, E.90, H.91, F.173, T.203, F.204, F.206, I.210, L.213, A.219, G.222, S.223, V.229, H.250, K.251, D.254, H.277 Ligands: ZN.1, EDO.3 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.31, A:F.173, A:F.204, A:F.206, A:I.210, A:L.213, A:A.219, A:V.229 Hydrogen bonds: A:E.90, A:T.203, A:F.204 Water bridges: A:K.251

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain A: M.75, K.251, G.276, H.277 Ligands: 7T5.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:M.75, A:H.277 Water bridges: A:K.251, A:K.251, A:A.278

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ryan, M.D. et al., LpxC Inhibitors With Fluoroproline As A Novel Zinc-Binding Group Can Serve As A Novel Class of Antibiotic With Activity Against Multidrug-Resistant Gram-Negative Bacteria. To Be Published

Release Date

2022-09-07

Peptides

UDP-3-O-acyl-N-acetylglucosamine deacetylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-3-O-acyl-N-acetylglucosamine deacetylase

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