SMTL ID : 7pl3.1

Crystal structure of catalytic domain in closed conformation of LytB from Streptococcus pneumoniae

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.1: 5 residues within 4Å: Chain A: N.149, R.185, S.186, K.187, K.190 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.190

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 6 residues within 4Å: Chain A: W.225, N.229, Y.230, R.233, R.235, E.248 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.233 PEG.3: 5 residues within 4Å: Chain A: E.137, K.140, L.144, K.269, L.270 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.140

1 x CA: CALCIUM ION(Non-covalent)

CA.4: 3 residues within 4Å: Chain A: D.16, D.18, E.20 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.16, A:D.18, A:E.20, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Martinez-Caballero, S. et al., Molecular basis of the final step of cell division in Streptococcus pneumoniae. Cell Rep (2023)

Release Date

2022-09-07

Peptides

Putative endo-beta-N-acetylglucosaminidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative endo-beta-N-acetylglucosaminidase

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